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  3. RAFL09-20-F24

RAFL09-20-F24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05578)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-F24 - full reading 
AGGAAACCAA AGGAACCTCG ACTTCACTAT GATTTACCTC CGAGCCCTCC 
GACTCTTCCC ATCATTGGTC ATCTTCACCT TCTTCTCTCT GTTCTAGTCC 
ACAGATCTTT ACAGACACTC TCCACCAAGT ATGGGTCTAT TCTCTATCTT 
CGCGTCTTCA GTTTCCCTGT AGCCCTCGTC TCCTCAGCAT CTATTGCTTA 
TGAGATCTTC AGGGAACACG ACGTGAACAT CTCGTCTCGT GGTTTCCCTC 
CTACCGATGA TTCCCTTTTT GCTGGATCTT TCAGCTTCAC CTCTGCTCCC 
TATGGAGATT ACTGGAAGTT CATGAAGAAG CTCCTGGTCA CGAACTTGCT 
TGGACCCCAG GCACTCGAGC GGTCACGAGG ATTCCGTGCA GATGAGCTAG 
ATCTGTTTTA CGAGAACCTG TTGGATAAAG CGATGAAGAA GGAGAGCGTG 
GATATCTGTG TGGAGGCGTT GAAGCTCAGT AACAACAGCA TCTGCAAGAT 
GATCATGGGG AGGAGTTGTT CAGAGGAGAA TGGTGAGGCA GAGAGAGTTA 
GGGCTTTGGC TACCTAGTTA GATGGCTTGA AGAAGAAGAT CTTATTGGCG 
AACATGTTGC GTGCGGGGTT TAAAAAGCTT GTTGTCTCAC TGTTTAGAAA 
GGAAATGATG GATGTTTCCA GCAGATTTGA TGAGCTGCTC GAAAGGATCC 
TTGTGGAACA TGAAGATAAA CTGGACATGC ATCATCAAGG TACAGACTTA 
GTGGACGCGT TGTTGGCAGC TTGTCGGGAC AAAAATGCAG AGTATAAGAT 
CTCTAGGAAC CATATCAAGT CGTTTTTCGC GGATCTCTTA TTTGCAAGCA 
CTGACACCTT TGTGCAAACA ACACAGTGGA CAGTGGCGGA GATCATTAAT 
AACCCTAATG TTCTTGAGAG ATTGAGAGGA GAAATCGATT CCGTGGTCGG 
GAAAGTAAGG TTGATTCAAG AAACTGATTT GCCAAACCTC CCTTATTTGC 
AAGCGGTGGT CAAGGAAGGG CTAAGACTGC ATCCGCCGGG GCCTCTCTTT 
GCAAGGTTCT CCCAAGAAGG GTGTAGGATC GGAGGGTTCT ATGTACCGGA 
GAAAACAACA TTAATGATTA ATGCTTATGC TGTGATGAGA GATTCTGATT 
CTTGGGAAGA TCCTGATGAG TTTAAACCAG AGAGGTTTCT AGCTTCGTCA 
AGATCAGAGC AGGAAAAGGA GAGAAGAGAG CAAGCAATTA AGTACATTGC 
TTTCGGAAGC GGACGAAGAA GCTGTCCTGG AGAAAATCTA GCATATATCT 
TTTTAGGAAC TGCAATTGGA GTGATGGTAC AGGGATTTGA GTGGAGAATC 
AAAGAAGAGA AAGTTAACAT GGAAGAGGCT AATGTAGGAC TGAGCTTGAC 
CATGGCTTAT CCTCTTAAGG TCACTCCTGT TCCTCGAACC CTAGTCCCCT 
TAACTCAGAA TCCACTGAAC CGGAGTTCAT GAATCTTTGG TAAGTAATTA 
GGTAGCCTTG TTTTTACGTT ACCGTGTCTG AGTTTACTGG TTTAGTTTGG 
CTAATGTGTG AAACCGTAAA CAATTGTGTT GTTATTCGGA TTTATTTGTG 
GATTGGTTCA TATATGGGGT TATCTTGAAA GCAGCAAACT TTAGCTTCTT 
CATGTTACTT GGTTCAATGG ATTTGAAGGA TGCCAGTTGG AGTAGC

Gene models with high sequence identity

  1. AT3G20080.1 [+] show detail - cytochrome P450, family 705, subfamily A, polypeptide 15
    E-value: 0; Score: 99.82

 

InterPro Scan Digest

Program Description E-value
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, E-class, group I 1.7e-28
FPrintScan Cytochrome P450, C-terminal 4.9e-08
FPrintScan Cytochrome P450, C-terminal 4.9e-08
FPrintScan Cytochrome P450, C-terminal 4.9e-08
FPrintScan Cytochrome P450, C-terminal 4.9e-08
superfamily Cytochrome P450 3.4e-31
superfamily Cytochrome P450 6.1e-79
HMMPanther CYTOCHROME P450, SUBFAMILY 93 1.3e-162
HMMPanther Cytochrome P450 1.3e-162
HMMPanther CYTOCHROME P450, SUBFAMILY 93 8.5e-108
HMMPanther Cytochrome P450 8.5e-108
HMMPfam Cytochrome P450 4e-14
HMMPfam Cytochrome P450 4.5e-65
Gene3D Cytochrome P450 6.7e-27
Gene3D Cytochrome P450 8.7e-73
PatternScan Cytochrome P450, conserved site 0

See the detailed result >

AT3G20080.1

Model type
Protein coding
Short Description
cytochrome P450, family 705, subfamily A, polypeptide 15
Curator Summary
member of CYP705A
Computational Description
"cytochrome P450, family 705, subfamily A, polypeptide 15" (CYP705A15); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 4 (TAIR:AT4G15380.1); Has 32700 Blast hits to 32491 proteins in 1676 species: Archae - 51; Bacteria - 3683; Metazoa - 11407; Fungi - 7150; Plants - 9260; Viruses - 6; Other Eukaryotes - 1143 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-F24 introduced

  • F14742 - rosette leaf::decreased size / rosette leaf::increased length / rosette leaf::increased width / cauline leaf::present in fewer numbers in organism / stem::abnormal / stem::present in fewer numbers in organism
  • F17941 - Specific phenotypes were NOT observed.
  • F29137 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found