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  3. RAFL09-20-J02

RAFL09-20-J02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08007)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-J02 - full reading 
AGAGATTTTG ACTCTGAATT GTTGCAGATA GCAATGGCGT CTGGAGCAGT 
AGCAGATCAT CAAATTGAAG CGGTTTCAGG AAAAAGAGTC GCAGTCGTAG 
GTGCAGGTGT AAGTGGACTT GCGGCGGCTT ACAAGTTGAA ATCGAGGGGT 
TTGAATGTGA CTGTGTTTGA AGCTGATGGA AGAGTAGGTG GGAAGTTGAG 
AAGTGTTATG CAAAATGGTT TGATTTGGGA TGAAGGAGCA AACACCATGA 
CTGAGGCTGA GCCAGAAGTT GGGAGTTTAC TTGATGATCT TGGGCTTCGT 
GAGAAACAAC AATTTCCAAT TTCACAGAAA AAGCGGTATA TTGTGCGGAA 
TGGTGTACCT GTGATGCTAC CTACCAATCC CATAGAGCTG GTCACAAGTA 
GTGTGCTCTC TACCCAATCT AAGTTTCAAA TCTTGTTGGA ACCATTTTTA 
TGGAAGAAAA AGTCCTCAAA AGTCTCAGAT GCATCTGCTG AAGAAAGTGT 
AAGCGAGTTC TTTCAACGCC ATTTTGGACA AGAGGTTGTT GACTATCTCA 
TCGACCCTTT TGTTGGTGGA ACAAGTGCTG CGGACCCTGA TTCCCTTTCA 
ATGAAGCATT CTTTCCCAGA TCTCTGGAAT GTAGAGAAAA GTTTTGGCTC 
TATTATAGTC GGTGCAATCA GAACAAAGTT TGCTGCTAAA GGTGGTAAAA 
GTAGAGACAC AAAGAGTTCT CCTGGCACAA AAAAGGGTTC GCGTGGGTCA 
TTCTCTTTTA AGGGGGGAAT GCAGATTCTT CCTGATACGT TGTGCAAAAG 
TCTCTCACAT GATGAGATCA ATTTAGACTC CAAGGTACTC TCTTTGTCTT 
ACAATTCTGG ATCAAGACAG GAGAACTGGT CATTATCTTG TGTTTCGCAT 
AATGAAACGC AGAGACAAAA CCCCCATTAT GATGCTGTAA TTATGACGGC 
TCCTCTGTGC AATGTGAAGG AGATGAAGGT TATGAAAGGA GGACAACCCT 
TTCAGCTAAA CTTTCTCCCC GAGATTAATT ACATGCCCCT CTCGGTTTTA 
ATCACCACAT TCACAAAGGA GAAAGTAAAG AGACCTCTTG AAGGCTTTGG 
GGTACTCATT CCATCTAAGG AGCAAAAGCA TGGTTTCAAA ACTCTAGGTA 
CACTTTTTTC ATCAATGATG TTTCCAGATC GTTCCCCTAG TGACGTTCAT 
CTATATACAA CTTTTATTGG TGGGAGTAGG AACCAGGAAC TAGCCAAAGC 
TTCCACTGAC GAATTAAAAC AAGTTGTGAC TTCTGACCTT CAGCGACTGT 
TGGGGGTTGA AGGTGAACCC GTGTCTGTCA ACCATTACTA TTGGAGGAAA 
GCATTCCCGT TGTATGACAG CAGCTATGAC TCAGTCATGG AAGCAATTGA 
CAAGATGGAG AATGATCTAC CTGGGTTCTT CTATGCAGGT AATCATCGAG 
GGGGGCTCTC TGTTGGGAAA TCAATAGCAT CAGGTTGCAA AGCAGCTGAC 
CTTGTGATCT CATACCTGGA GTCTTGCTCA AATGACAAGA AACCAAATGA 
CAGCTTATAA CATTGTCAAG GTTCGTCCCT TTTTATCACT TACTTTGTAA 
ACTTGTAAAA TGCAACAAGC CGCCGTGCGA TTAGCCAACA ACTCAGCAAA 
ACCCAGATTC TCATAAGGCT CACTAATTCC AGAATAAACT ATTTATGTAA 
AAG

Gene models with high sequence identity

  1. AT5G14220.1 [+] show detail - Flavin containing amine oxidoreductase family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily FAD/NAD(P)-binding domain 1.9e-35
superfamily FAD/NAD(P)-binding domain 0.00089
FPrintScan Adrenodoxin reductase 5.4e-06
FPrintScan Adrenodoxin reductase 5.4e-06
HMMPanther AMINE OXIDASE 1.3e-21
HMMTigr Protoporphyrinogen oxidase 5.7e-64
Gene3D no description 4.6e-10
Gene3D no description 3.4e-55
HMMPfam Amine oxidase 2.7e-53

See the detailed result >

AT5G14220.1

Model type
Protein coding
Short Description
Flavin containing amine oxidoreductase family
Curator Summary
Encodes PPO2, a putative protoporphyrinogen oxidase based on sequence homology. Also known as MEE61 (maternal effect embryo arrest 61). mee61 mutant shows arrested endosperm development.
Computational Description
HEMG2; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT4G01690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-J02 introduced

  • F13303 - seed::increased size / seed::increased length
  • F26238 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found