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  3. RAFL09-20-L04

RAFL09-20-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05585)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-L04 - full reading 
GATCTTGTTC CCCGTCGTCG TCTCTAACTT ACACATTTCC ATTCTCCGAA 
TCTCTATCTC TCCTTTTGCT TCATCGGTGT GATCTCTGAG ACGAAAGAAG 
AAGAAGATGG TGGTTATTGA GCAGAAGAAG AGGTTTGCTT TGTTTTTAGC 
GACGTGTGAT TCAGAGTTCG TGAAGAAGAC TTACGGTGGT TACTTCAATG 
TCTTCGTTTC AACTTTCGGC GAAGAAGGTG AGCAATGGGA TCTATTCCGA 
GTCATCGACG GACAATTTCC CGACGAGAAT GATTTAGACA AGTACGACGG 
TTTCGTTATC AGTGGTAGTC CACATGATGC TTTCGGAGAC GCCGATTGGA 
TTGTTAAGCT TTGCGAAGTT TGTCAGAAAC TTGATCACAT GAAGAAGAAA 
GTTCTCGGCA TCTGCTTCGG CCACCAGATA ATTACTAGAG TTAAAGGTGG 
GAAGATAGGA AGAGCACTCA AAGGTGCAGA TATGGGACTT AGAAGCATAA 
CCATAGCGAA AGACAATGAA AAACTACGAG GTTACTTTGG AGACGTTGAG 
GTCCCAGCAT ATTTAGCTAT TATAAAATGT CATCAGGATG AAGTGTTGGA 
ACTTCCTGAG TCTGCTACAC TACTTGCTTC TTCTGAGGTA TGTAACGTCG 
AGATGTTCTC TATTGGAGAT CATTTTTTCT GTATTCAAGG GCATCCAGAG 
TATAACAAAG AGATTCTGTT TGAGATTGTG GACCGAGTCC TTAATATGAA 
GCTGATGGAG CAAGAGTTTG CGGATAAGGC AAAGAGTACG ATGGAGACTG 
CGCAACCAGA CAGGATTCTA TGGCAGAAGC TCTGCAAAAA CTTCCTGAAA 
GGTTGATGAT CCGAGACTAT GTTATCTCTG TATGAACTTA TCAAAAACTA 
TGTCATCTCT CAATAAACCT GCAGTATCTT TC

Gene models with high sequence identity

  1. AT4G30550.1 [+] show detail - Class I glutamine amidotransferase-like superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
BlastProDom Homoserine O-succinyltransferase 0.000003
ProfileScan Glutamine amidotransferase type 1 13.541
superfamily Class I glutamine amidotransferase-like 8e-39
HMMPfam Glutamine amidotransferase class-I, C-terminal 0.00000000000029
Gene3D no description 1.8e-40
HMMPanther GMP SYNTHASE 0.000003
HMMPanther GMP SYNTHASE-RELATED 0.000003

See the detailed result >

AT4G30550.1

Model type
Protein coding
Short Description
Class I glutamine amidotransferase-like superfamily protein
Computational Description
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: catalytic activity, acyltransferase activity; INVOLVED IN: L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine O-succinyltransferase (InterPro:IPR005697), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G23970.1); Has 7193 Blast hits to 7193 proteins in 1745 species: Archae - 322; Bacteria - 3933; Metazoa - 5; Fungi - 197; Plants - 101; Viruses - 0; Other Eukaryotes - 2635 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-L04 introduced

  • F03026 - Specific phenotypes were NOT observed.
  • F20438 - Specific phenotypes were NOT observed.
  • F28513 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found