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RAFL09-20-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05587)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-L07 - full reading
ACATATCAAT GTTAATTTGT ATATAAGGAG CTAAGAACAA ACCCAATTAG 
GCAACTAGCA ATTGCTAAAA CACGTAAGAT CTCAAATATG ACCACGTTAT
TCCTCCTTAT TGCTCTATTC ATCACAACCA TCCTCAACCC AACAAGTGGA
GAATCAGTAG GTGTATGCTA TGGAATGATG GGGAACAACC TTCCTTCTCA
ATCAGACACA ATCGCTCTCT TTAGACAAAA CAACATCCGA CGTGTTAGAC
TCTACGATCC AAACCAAGCC GCTTTAAACG CTCTTAGAAA CACGGGTATC
GAAGTCATCA TCGGCGTTCC AAACACCGAT CTTCGTTCAC TCACTAACCC
TTCTTCCGCT AGATCATGGC TCCAAAACAA CGTCCTCAAC TATTACCCCG
CCGTTAGCTT CAAGTACATC GCCGTAGGTA ACGAAGTATC TCCGTCGAAC
GGCGGTGATG TTGTGCTCCC TGCCATGCGT AACGTTTACG ATGCTCTAAG
AGGTGCAAAT CTTCAAGATC GTATTAAAGT TTCTACCGCC ATTGATATGA
CTTTGATTGG AAACTCTTTC CCTCCTTCCT CCGGAGAGTT TCGTGGTGAC
GTTAGATGGT ATATCGATCC CGTCATCGGG TTTCTTACGA GTACGAACTC
AGCGTTACTA GCCAACATCT ATCCTTACTT CAGCTACGTT GACAATCCAC
GTGACATATC TCTCTCTTAC GCTCTCTTCA CTTCTCCTTC CGTCGTCGTA
TGGGACGGCT CTCGTGGCTA CCAAAACCTC TTTGACGCTT TACTTGACGT
TGTTTACTCT GCCGTTGAAC GCTCAGGCGG TGGATCTCTC CCAGTGGTTG
TTTCCGAGAG CGGATGGCCT TCTAACGGTG GAAACGCCGC GAGTTTCGAT
AACGCGCGAG CTTTTTACAC GAATCTTGCG TCGCGTGTGA GAGAGAACAG
AGGAACACCG AAGAGACCTG GAAGAGGAGT GGAAACGTAT TTGTTCGCTA
TGTTTGATGA GAATCAAAAG AGTCCTGAGA TCGAGAAGAA TTTTGGTTTG
TTTTTTCCTA ATAAACAACC AAAATTTCCG ATCACATTCT CTGCCGCGAG
AGACGGTACG GCGGTTGAGT GATGATTTTA TATGCTGAGA TTTATGTGAA
TAATTGGGAG ATTATCCCAT AAAAGGTTCC AAATAAAGAC AAATTTCAAA
TAAAACCTGT TAGTCCAAGT TAAATTAAGT

Gene models with high sequence identity

  1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Glycoside hydrolase, family 17 0
Gene3D Glycoside hydrolase, subgroup, catalytic core 5.2e-120
HMMPfam Glycoside hydrolase, family 17 8e-131
superfamily Glycoside hydrolase, catalytic core 1.8e-113

See the detailed result >

AT4G16260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-L07 introduced

  • F02447 - Specific phenotypes were NOT observed.
  • F04025 - Specific phenotypes were NOT observed.
  • F11130 - Specific phenotypes were NOT observed.
  • F15802 - Specific phenotypes were NOT observed.
  • F27950 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found