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  3. RAFL09-20-L07

RAFL09-20-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05587)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-L07 - full reading 
ACATATCAAT GTTAATTTGT ATATAAGGAG CTAAGAACAA ACCCAATTAG 
GCAACTAGCA ATTGCTAAAA CACGTAAGAT CTCAAATATG ACCACGTTAT 
TCCTCCTTAT TGCTCTATTC ATCACAACCA TCCTCAACCC AACAAGTGGA 
GAATCAGTAG GTGTATGCTA TGGAATGATG GGGAACAACC TTCCTTCTCA 
ATCAGACACA ATCGCTCTCT TTAGACAAAA CAACATCCGA CGTGTTAGAC 
TCTACGATCC AAACCAAGCC GCTTTAAACG CTCTTAGAAA CACGGGTATC 
GAAGTCATCA TCGGCGTTCC AAACACCGAT CTTCGTTCAC TCACTAACCC 
TTCTTCCGCT AGATCATGGC TCCAAAACAA CGTCCTCAAC TATTACCCCG 
CCGTTAGCTT CAAGTACATC GCCGTAGGTA ACGAAGTATC TCCGTCGAAC 
GGCGGTGATG TTGTGCTCCC TGCCATGCGT AACGTTTACG ATGCTCTAAG 
AGGTGCAAAT CTTCAAGATC GTATTAAAGT TTCTACCGCC ATTGATATGA 
CTTTGATTGG AAACTCTTTC CCTCCTTCCT CCGGAGAGTT TCGTGGTGAC 
GTTAGATGGT ATATCGATCC CGTCATCGGG TTTCTTACGA GTACGAACTC 
AGCGTTACTA GCCAACATCT ATCCTTACTT CAGCTACGTT GACAATCCAC 
GTGACATATC TCTCTCTTAC GCTCTCTTCA CTTCTCCTTC CGTCGTCGTA 
TGGGACGGCT CTCGTGGCTA CCAAAACCTC TTTGACGCTT TACTTGACGT 
TGTTTACTCT GCCGTTGAAC GCTCAGGCGG TGGATCTCTC CCAGTGGTTG 
TTTCCGAGAG CGGATGGCCT TCTAACGGTG GAAACGCCGC GAGTTTCGAT 
AACGCGCGAG CTTTTTACAC GAATCTTGCG TCGCGTGTGA GAGAGAACAG 
AGGAACACCG AAGAGACCTG GAAGAGGAGT GGAAACGTAT TTGTTCGCTA 
TGTTTGATGA GAATCAAAAG AGTCCTGAGA TCGAGAAGAA TTTTGGTTTG 
TTTTTTCCTA ATAAACAACC AAAATTTCCG ATCACATTCT CTGCCGCGAG 
AGACGGTACG GCGGTTGAGT GATGATTTTA TATGCTGAGA TTTATGTGAA 
TAATTGGGAG ATTATCCCAT AAAAGGTTCC AAATAAAGAC AAATTTCAAA 
TAAAACCTGT TAGTCCAAGT TAAATTAAGT

Gene models with high sequence identity

  1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Glycoside hydrolase, family 17 0
Gene3D Glycoside hydrolase, subgroup, catalytic core 5.2e-120
HMMPfam Glycoside hydrolase, family 17 8e-131
superfamily Glycoside hydrolase, catalytic core 1.8e-113

See the detailed result >

AT4G16260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-L07 introduced

  • F02447 - Specific phenotypes were NOT observed.
  • F04025 - Specific phenotypes were NOT observed.
  • F11130 - Specific phenotypes were NOT observed.
  • F15802 - Specific phenotypes were NOT observed.
  • F27950 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found