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  3. RAFL09-20-O21

RAFL09-20-O21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08014)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-O21 - full reading 
AAGTTAACGG CGATTATCTT CGTTCACACA AGCAACACAA AAGAGAAAAC 
ATGAATCATC TCTCTCTCCC TCTCTCCGGT TCCACAGTAA AGAATTGATT 
CCTCAATCTC ACGCGGAAGC AAAATCCAAA TTCTAAAATT CTAAGAAACC 
ACTCTAATCA CATCGCTCTA TCGATCAAAA TCGAAACCCT TATTCAAAAA 
TCTCTTATTT TTTCCATTTT TCTCTCAATC ATCTGAATCG GTTTTGAGAT 
GAGCTCCGAT TCACCGGCGG CTGGAGACGG TGGCGAACAA GCCGCTGTGG 
GAACAAGCGT GCCTTCACCT TCATACGACA AACAAAAGGA GAAGGCACGT 
GTGAGTAGAA CATCTCTGAT ACTATGGCAC GCGCACCAAA ACGACGCAGC 
TGCAGTTCGG AAACTCTTGG AGGAAGATCC GACTTTGGTT CACGCTAGAG 
ACTATGACAA ACGAACGCCT CTCCACGTGG CGTCGCTTCA TGGATGGATC 
GATGTTGTTA AATGTCTGCT TGAGTTTGGT GCTGATGTCA ATGCTCAGGA 
TAGGTGGAAG AACACGCCAC TGGCTGATGC AGAAGGAGCT AGGAAGCAGA 
AAATGATTGA ACTGCTGAAA TCTCATGGTG GTTTGTCTTA TGGTCAAAAC 
GGAAGTCACT TTGAACCAAA GCCTGTGCCA CCACCAATTC CAAAGAAATG 
TGACTGGGAA ATTGAACCTG CTGAGCTGGA TTTTTCAAAT GCTGCAATGA 
TTGGAAAGGG TTCATTTGGT GAGATTGTGA AAGCCTATTG GAGAGGAACA 
CCGGTAGCTG TGAAACGTAT TCTTCCTTCT CTTTCAGATG ATAGACTGGT 
TATTCAGGAC TTCAGGCATG AGGTTGATTT GCTAGTTAAG CTTCGCCATC 
CAAATATAGT CCAATTCTTA GGAGCGGTAA CCGAAAGAAA GCCCCTTATG 
TTAATCACTG AGTACTTACG CGGGGGAGAT CTTCATCAAT ACCTCAAGGA 
GAAGGGCGGT CTTACTCCAA CAACTGCTGT CAACTTTGCT TTGGATATCG 
CGAGAGGAAT GACATATCTT CACAATGAAC CTAATGTTAT CATTCACCGA 
GATCTTAAAC CAAGGAACGT TCTTCTGGTT AATTCTAGTG CAGACCACTT 
GAAAGTTGGA GACTTTGGAC TTAGTAAGCT CATAAAAGTT CAAAACTCTC 
ATGATGTCTA CAAAATGACT GGAGAAACAG GAAGCTATCG TTATATGGCT 
CCTGAAGTAT TCAAGCATAG AAGATATGAC AAGAAAGTCG ATGTCTTCTC 
CTTTGCAATG ATACTTTACG AGATGCTTGA AGGAGAGCCA CCATTTGCGA 
ACCATGAGCC ATATGAAGCA GCCAAACATG TATCTGATGG ACATAGACCT 
ACATTCCGTT CCAAAGGATG CACACCAGAT CTAAGAGAGT TAATTGTGAA 
ATGCTGGGAC GCAGACATGA ACCAGAGACC GTCGTTTCTG GACATTCTCA 
AGAGACTTGA AAAGATCAAG GAAACTCTAC CATCAGATCA CCATTGGGGC 
TTATTCACTT CATAATACAC AAAATCCATT ATTTAAGCAC AAAAACAACC 
AGAAACAAGA AAGTATCATT CTCTGTTTGC CTTATTAATC TCTGTTTCAT 
TTCTTTTGTA AAGATTGTTT CTTTTTCATC TTTTCATTTG CTTTAAAAGA 
GTGTGAGATA GAAAGCTTTT ATTGTTGTTA CATGGATTGG ATTGAGTTTG 
CAGGTTAATG AGAAGTTCAT ATCATATCG

Gene models with high sequence identity

  1. AT1G14000.1 [+] show detail - VH1-interacting kinase
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ankyrin repeat 1.9e-05
HMMSmart Serine/threonine-protein kinase domain 4.3e-69
HMMSmart Tyrosine-protein kinase, catalytic domain 3.3e-80
HMMPfam Serine-threonine/tyrosine-protein kinase 2.5e-66
HMMPfam Ankyrin repeat 4.8e-11
ProfileScan Protein kinase, catalytic domain 48.032
ProfileScan Ankyrin repeat 14.639
ProfileScan Ankyrin repeat-containing domain 17.369
FPrintScan TYRKINASE 1.8e-11
FPrintScan TYRKINASE 1.8e-11
FPrintScan TYRKINASE 1.8e-11
HMMPanther ANKYRIN-KINASE 7.7e-186
HMMPanther SERINE-THREONINE PROTEIN KINASE 7.7e-186
superfamily Protein kinase-like domain 7.2e-83
superfamily Ankyrin repeat-containing domain 4.1e-22
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
Gene3D Ankyrin repeat-containing domain 5.5e-17
Gene3D no description 1e-20
Gene3D no description 2e-52
HMMPIR Integrin-linked protein kinase 8.9e-268

See the detailed result >

AT1G14000.1

Model type
Protein coding
Short Description
VH1-interacting kinase
Curator Summary
Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.
Computational Description
VH1-interacting kinase (VIK); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT3G58760.1); Has 139285 Blast hits to 133759 proteins in 5118 species: Archae - 180; Bacteria - 15286; Metazoa - 53967; Fungi - 12530; Plants - 33711; Viruses - 527; Other Eukaryotes - 23084 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-O21 introduced

  • F08713 - Specific phenotypes were NOT observed.
  • F12650 - seed::increased size / seed::increased length
  • F22834 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found