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  3. RAFL09-20-P20

RAFL09-20-P20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08018)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-P20 - full reading 
ACCCCCCCGA AAACAATGAC GGCGAGTGAG ACTATCGCCA CCGCGATAAA 
TCAGATTGAT GAGAAGAAGG AAAAGCTAAA GAAAGCTTTC GACGATCTTC 
AAGCTCATCG CTCTCTCCTT TCACCGTCTT TCTCACTTTC CTGGTCTGAG 
ATCGATTCTC ACTTTTCCTC TCTCCAATCC TCCCTTGCTA GCCGTTTCCG 
CCTCCTCCAC TCTACATCTC CTTTGGAACA TGATTCGTAT AGAATCGACG 
CTTCTGATGC AGGGAAATCG TCGTCTTCGG AGGAGGTATC GGAGCAACCC 
GTTGTTGAGC CGGAGTTGAG AGCCTTGTGT GAGAAGATTG ACGGAATTGG 
TTTGATTAAG TATTTGATTA GGATATGGGA TGATGAAACT CCTCTCAATC 
AGGAAGTTTC TGCAGCGATT CGTTACTCTC CGGATACGGC GTCCATGGTG 
CTTGACGCGA TTGAAGGTTC GAACTACACA CCGTCATCAT CGGGAAGATC 
ATTCGATGTA AGGAGAGTTT TCGTTTTGTT AATGGAAGTT TTGATTGAGA 
TCAATGCGAA TATCACTGTT GATACGAGAA ATAGAGCTAA GAAACTGGCT 
TACCATTGGA AATCTAAGGT TGGTGTCAAG CCTTTCGAGG CGTTAGTGTT 
TCTGCATTTG GTCGCAGCTT TTGAATTAGG ATCAGAATTT GACACAGAGG 
AGCTTTCTGA TTACGTTTTC ATGATCGCTA AGTATAAGCA AGCAACTTTG 
GTTTGTAACA AGATTGGTGT AGATAGGAAA AGAGTTGGGA AACTCATCAA 
GACTCTCTTG GATTCTGGTA AACCAATTTT AGCAGTCAAA TTCATGTATG 
AGTGTGGGAT GACTGATGAA TTTGAGCCAA TCCCTGTTTT GAAATCTTAC 
ATTAAGGACT GTAGAGAAGC TGCTCTTAGA GTTTGCGTGG AAGATAACTA 
CTCTCTCAAG TCGCAGAACG AAGCCTCTGA TAAAGAAGTC AGTGCCTTGA 
AACCATTGAT CAAAATCATC AAAGATCAGA ACCTTGAATC AGAGTTTACT 
CAGGAGAAAG TTGAGGAACG TGTAGAAGAG CTGGAGAAAA ATAAGGCATT 
GAGGAAACGC AACACGACTA ATCCTCCCAA GCAAGAGCCA CAGCAAAAGG 
GGAAAAAGCG GACTAGAGAC TGCAAAAATG GGTCACAAGT TCCAGTTCCG 
AGTCAGCAGC TACTTTCTAG ACCAGAAGCT CTTCTTATGC CTGAGCATAG 
TCATCATGGC TTACAGTTGA ACCCTTATGG TCTTATGACC TCAGCATTTT 
CTGGTGTTGT TGTGAACCCA TTAACTGGGC TCTTTGGTTC AGGTGCAACT 
CCTCAATCTC TTTACTATGC TCAGCAAACT GGATATGTGT TGCCGCCTCA 
ATACCACCCG CCTTATTATT CTCAGTAGCT AGCTGCATCT CGACAATAAG 
ATCTTAATCT CCTCAATGTA AAATGTTATC TTTGTAGAAT ATTTGCCTTG 
ATGGAAAGTA AAAAAATCAT TCTAACAC

Gene models with high sequence identity

  1. AT5G16320.1 [+] show detail - FRIGIDA like 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Frigida-like 1.6e-86
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT5G16320.1

Model type
Protein coding
Short Description
FRIGIDA like 1
Curator Summary
family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
Computational Description
FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-P20 introduced

  • F00408 - Specific phenotypes were NOT observed.
  • F17604 - Specific phenotypes were NOT observed.
  • F25250 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found