1. Home
  2. Full-length cDNAs
  3. RAFL09-21-A20

RAFL09-21-A20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08019)

full reading [+] show sequence

Nucleotide sequence: RAFL09-21-A20 - full reading 
AAAGCTTAAC AACCTCCACT AGAGACTTTC TTGAGCAAAA AAGATTGGTT 
ATAAAGGACC AACCATTGTC ATGTTATTGA GTGTCATTTT TGTGAGGGAG 
AGAATTAAGA GAGCAAAATG AGCATAAATA GGAATCTGTT GAATATCATA 
ATAATCCTTT GTATATGTCT CAATTTGGGT TGTAACGATG GAGCTCAAGA 
AAGAGAGACT GATTCTCATA CTATCCAAGT CAGCTCTCTC CTCCCTTCAT 
CATCATCATC TTGTGTTCTT TCTCCCAGAG CGTCTACTAC AAAGTCTTCA 
CTGCACGTGA CGCATAGACA CGGCACGTGT TCGCGTCTAA ACAATGGCAA 
GGCCACGAGT CCAGACCATG TCGAGATCCT AAGACTCGAC CAGGCTCGCG 
TAAACTCAAT CCACTCAAAA CTATCGAAGA AACTCGCAAC AGATCACGTC 
AGTGAAAGCA AGTCAACGGA TCTACCGGCT AAAGACGGAA GCACACTCGG 
TTCAGGTAAC TACATCGTGA CGGTCGGCCT CGGGACACCA AAGAACGATC 
TATCACTAAT CTTCGACACT GGAAGCGATT TAACGTGGAC TCAGTGTCAG 
CCATGTGTTC GAACTTGCTA TGACCAGAAG GAACCAATCT TTAACCCTTC 
TAAGTCTACT TCTTACTACA ACGTATCCTG CTCATCGGCT GCGTGTGGTT 
CTCTCTCTTC TGCTACAGGA AACGCCGGAA GCTGTTCGGC TTCGAATTGC 
ATCTACGGTA TTCAATACGG CGATCAATCG TTCTCCGTCG GATTTCTCGC 
CAAGGAGAAG TTTACACTAA CGAACTCCGA CGTATTTGAC GGCGTTTATT 
TCGGTTGCGG CGAGAACAAC CAAGGACTTT TCACCGGTGT CGCCGGACTT 
CTCGGTCTTG GTCGTGACAA GCTTTCGTTT CCGTCGCAGA CGGCAACGGC 
TTACAATAAG ATCTTCTCTT ACTGCCTCCC TTCCTCCGCT AGCTACACCG 
GACATCTCAC ATTCGGATCC GCCGGAATCT CCAGATCCGT TAAATTCACA 
CCAATTTCAA CCATCACTGA TGGAACTTCC TTCTACGGCC TTAATATCGT 
CGCAATCACC GTCGGCGGTC AGAAATTGCC GATTCCTTCA ACTGTATTCT 
CTACTCCGGG AGCTTTAATC GATTCCGGCA CCGTTATCAC TCGTCTCCCG 
CCGAAAGCCT ACGCGGCGTT AAGAAGCTCG TTCAAGGCGA AGATGTCAAA 
GTATCCGACC ACGTCGGGCG TCTCGATCTT GGACACGTGT TTCGATCTCA 
GCGGGTTTAA GACGGTGACT ATCCCGAAAG TGGCGTTCTC TTTCAGCGGT 
GGCGCCGTCG TGGAGCTTGG TTCGAAAGGG ATATTTTACG TGTTTAAGAT 
ATCTCAGGTT TGTCTGGCGT TTGCAGGGAA TAGCGATGAC AGTAACGCTG 
CCATCTTTGG AAACGTTCAG CAGCAAACGC TAGAAGTTGT GTATGATGGT 
GCGGGTGGGC GGGTCGGGTT TGCTCCAAAC GGGTGTAGTT AAGTTAGTTA 
ATGAAAAACA GAACGGGGTA AATTTTAAAT TTATGGATTT GGCACAAATT 
AGCTTTATCC TTAATCAAGT GTGTAATTTG GGTAAAGATC GGAATTCGTG 
ATGGTCTTTG AAGTAATTGT ATAGTAATAA GTGTGCATGA TACAACAATT 
ACAAGAACAA ACTGTTTATT GTAAAATTTT ATTCCAATAC AACTATACAA 
GATG

Gene models with high sequence identity

  1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 4.4e-131
HMMPanther Peptidase A1 4.4e-131
Gene3D Peptidase aspartic, catalytic 0.000000000048
Gene3D Peptidase aspartic, catalytic 7.8e-43
superfamily Peptidase aspartic 8.4e-97
FPrintScan Peptidase A1 0.000013
FPrintScan Peptidase A1 0.000013
FPrintScan Peptidase A1 0.000013
HMMPfam Peptidase A1 8.2e-22

See the detailed result >

AT5G10770.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-21-A20 introduced

  • F01349 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found