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  3. RAFL09-21-H07

RAFL09-21-H07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05608)

full reading [+] show sequence

Nucleotide sequence: RAFL09-21-H07 - full reading 
GAACTCTCTC GTTCCGTCTT CTCCGATTCG CTTTACACTA CTTCTTCCCT 
CGTCTCTCTC TCTCGCGCTT CACTGTGAAT TAATCGAGAG ATCTAAATAT 
CCGCCATGGA CAGAGCACAA TTGATCTTGT TAGGTCTACC TATATTCTTG 
TTTTGTTCGG ATCTCTTCAA CCTCTTCACT CCTCCGCCTC CTAAACCTCA 
GCCTCACCGT CCTCATCAGC CACCGCATAT TCCTCACCAG CATCGTCCTA 
ATGCGATCAT CCCCGAAACC CTAGACTTTC CTTCACAGAA GACAAGTGGC 
TTAGGAGGAG CAATTGGATA TGGAAATACA GTAGAGATCA ACTTCTGCGT 
CTCCTGTTCT TACAAGGGAA CTGCAGTCAC CATGAAGAAG ATGTTAGAGA 
CGGCTTTTCC CGGTTTAGAT GTGATTCTCG CAAATTACCC ACCACCAGCA 
CCAAAACGCC TTCTAGCTAA GGTTGTGCCG GTTGTTCAGA TGGGAGTTAT 
TGGTATGATA GTTGCAGGTG ATCGTATCCT TCCCATGATT GGAATTACGA 
ACCCACCTGC TTGGTTCCAC TCCTTGAGGG CCAACAGATT TGGATCCATG 
GCTTCCACTT GGCTTATCGG AAACTTTCTG CAGTCTTACC TTCAAAGCTC 
AGGCGCCTTT GAAGTTCACT GCAACGGCGA ACCGGTGTTC TCTAAATTGA 
AAGAAGGTAG ATTCCCAGGA GAGATCGAGC TGAGAGATCT CATCAGTAAA 
ACTCTAACAC GACCGAGCAT ACTCACAGGC AGCAGCTACT GAAGTAGTAG 
TATCAGAAGA TAGAAACGCT GGAACCTTTC CGTGAAGTTC TCACAAGTAT 
TTTTAATACG AGATGGTGGT ACAATCTCAT GTGCCAAAAG TGTCTTCTAT 
GTTTCAGTTA ATCTGTTGAT GTAGCATACC TTGGTTTACC TAGAGTGAAC 
TCTTTTGATC C

Gene models with high sequence identity

  1. AT5G58640.1 [+] show detail - Selenoprotein, Rdx type
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Selenoprotein, Rdx type 2.1e-58
HMMPanther Selenoprotein T 9e-95
HMMPfam Selenoprotein, Rdx type 1.1e-16

See the detailed result >

AT5G58640.1

Model type
Protein coding
Short Description
Selenoprotein, Rdx type
Computational Description
Selenoprotein, Rdx type; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein T (InterPro:IPR019389), Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT-like protein precursor (TAIR:AT3G47300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-21-H07 introduced

  • F06335 - Specific phenotypes were NOT observed.
  • F18440 - seed::increased size / seed::increased length
  • F19423 - Specific phenotypes were NOT observed.
  • F21915 - Specific phenotypes were NOT observed.
  • F25113 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found