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RAFL09-21-N21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05612)

full reading [+] show sequence

Nucleotide sequence: RAFL09-21-N21 - full reading 
AAAGAGCGAG AAATGGAGAT CTCGAAGGTT TAATAACGTC TTCAGGGAAA 
AAAGCTTTGG TTGCCGCCAC CGACTTAGTC GGACTTACCT CCGGGAAGCT 
TCGCGAACTC TCGATTCGTC GATCTAAGGA ACCTTCCGTT GTTTATTTCG 
ACGAAGGAGA TAATAAGGAT AACGTCGTCG CAACGCCTGA GGTTAGATCT 
GTTAACACCA AACCTAGCGA GAAAATCGTT GATTCGAAAG TCCTGAGAAA 
TGAATTTAGC GATGAAGTTA AGAATTCAAA TAGAGAAGGT GAGATTAAGG 
TTTCAGGCGT TGAAGCGGGA GAGATTATTG GAGTTAGAGC TGTTGAATCA 
GGTACGGTAA CGGAAGCATC ATCTCCGTCG GAGGTAGTAC CTCCGGTGAA 
GAGACGGAGA CCTAGAGAGA GGAAGGTTCC TTCAACTCCT ATGGCAAGAG 
CTTATGGGTT TTTTAATTTA GGAGCTGCTC TTGCTTGGGG AGCTGTTAAA 
GAATCTACGT ATAGGATGGT AAATGGGACA CCAATGACAC CAGACAATCA 
GCCTGCGTTA TCGTCTTTGA TGTCTAAGGA AAATGCTGAA AGATTGGCTC 
TTGGATTGTG TGAAATGCGT GGAGCTGCTC TTAAAGTTGG CCAAATGTTG 
AGTATACAGG ACGAGAGTCT CGTTCCTGCT CCGATCTTGA ATGCTCTGGA 
ATATGTGCGT CAAGGTGCTG ATGTGATGCC AAGGAGTCAA CTTAATCCAG 
TTTTGGATGC TGAGTTAGGT TCCAATTGGC AATCCAAGTT GACTAGTTTT 
GATTATGAAC CGCTAGCGGC AGCGAGTATT GGTCAGGTGC ACAGAGCTGT 
TACTAAAGAT GGATTAGAAG TTGCAATGAA GATTCAGTAC CCTGGCGTTG 
CCAACAGCAT TGAAAGTGAT ATTGAAAATG TCAGACGCTT GTTAAATTAT 
ACAAATCTAA TTCCAAAGGG ACTGTTTCTA GACAGAGCTA TAAAGGTTGC 
CAAAGAAGAG TTGGCGCAGG AGTGTGACTA TGAAATCGAA GCAGTCAGTC 
AAAAGCGCTT TCGTGATTTG CTTTCAGACA CTCCAGGGTT TTATGTGCCG 
CTTGTGGTAG ATGAGACTTC AAGCAAAAAG ATTCTAACCA CTGAACTTAT 
ATCTGGGATC CCCATTGATA AAGTAGCGTT GTTAGATCAG AAAACACGAG 
ATTATGTTGG GAGGAAGATG CTAGAACTCA CTTTGAAGGA GCTCTTTGTC 
TTCCGCTTTA TGCAGACGGA TCCAAACTGG GGTAACTTCT TATACAATGA 
AGCCACAAAG ACAATAAATC TTATCGATTT CGGAGCAGCT CGTGATTACC 
CCAAGAAATT CGTCGATGAC TATCTACGAA TGGTGATGGC ATGTGCAGAA 
AAAGACAGTG AAGGAGTGAT TGAAATGTCT AGGAGACTCG GGTTCTTAAC 
CGGAGATGAA TCAGATGTAA TGCTAGACGC TCATGTCCAA GCCGGTTTCA 
TAGTGGGTCT ACCTTTTGCA GAACCCGGTG GCTATGCTTT CCGAACCAAC 
AACATTGCTT CTAGTATCTC CAATTTAGGA GCAACCATGT TGAAACATAG 
ACTCAGTCCA CCACCCGATG AAGCCTATAG CCTTCACCGT AAATTATCCG 
GCGCTTTCTT GGCTTGTATC AAGCTTGGAG CCACCGTCCC TTGCCGTGAT 
CTATTGCTCC AAGTTTACAA CAAGTATCAG TTCGATGATG AGCCACAAGA 
TCCCGTAGTA GCTACAAGCT CTGTTTCTTC ATAGCTCCCT CATACACACA 
CACTACATTA ATGATTTTTT CTCGTCCCCT TGTAGGGAGT ATAAAACGAT 
TCTTTCTTTG GTACACCTTC GAGTTTAATT TAGTATAATT TTTTCAATAA 
TGTAAAATGT TAAATATTGC

Gene models with high sequence identity

  1. AT4G01660.1 [+] show detail - ABC transporter 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 1.2e-08
HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN AARF(E.COLI)/ 3.8e-138
HMMPanther CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-REL 3.8e-138
HMMPfam ABC-1 1.4e-35

See the detailed result >

AT4G01660.1

Model type
Protein coding
Short Description
ABC transporter 1
Curator Summary
Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant
Computational Description
ABC transporter 1 (ABC1); CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 8616 Blast hits to 8614 proteins in 1786 species: Archae - 122; Bacteria - 4355; Metazoa - 377; Fungi - 416; Plants - 667; Viruses - 9; Other Eukaryotes - 2670 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-21-N21 introduced

  • F08501 - rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::decreased size
  • F16636 - Specific phenotypes were NOT observed.
  • F20411 - Specific phenotypes were NOT observed.
  • F22013 - Specific phenotypes were NOT observed.
  • F25102 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found