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  3. RAFL09-22-A19

RAFL09-22-A19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08034)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-A19 - full reading 
TAGACTGAGT CTGGTTACTT GAAGGGGATC ATGTGAATAC GTCGACTGGT 
AAAGAAAGAA AGATTGCTGC TTTTTAGATT TAGATTCGAG AATGTATGGA 
AGATCTGGTC TTGACAGGTT TAAGAAGTCC CAAACTTCGG AACCCTTCTC 
TGTATCAGCA AATCCTCCTC CGGTGGTACA ACAACATCTG TCTCCGGAGG 
CATTGTCGGG GCAAAAAACT CAGATTGGAG CTGGTCAATC AAACTGGCAT 
CCCCCTGATT GGGCGATTGA GCCTCGTGCC GGTGTCTACT CTCTGGAAGT 
TGTGAAAGAC GGCCAGATCC TTGATCGGAT TCATCTAGAT AGACGAAGGC 
ATATCTTCGG GAGACAACAT CAGACTTGTG ATTTTGTCCT TGATCATCAG 
TCTGTTTCCC GCCAGCATGC CGCAGTTGTT CCTCACAAGA ATGGCAGCAT 
CTTTGTGATT GACTTGGGAT CAGCTCATGG TACGTTTGTT GCAAATGAGA 
GGTTGACTAA AGATACTCCT GTAGAGCTTG AAGTGGGTCA ATCCTTACGA 
TTTGCTGCCT CCACAAGAAT CTACCTTCTG AGAAAGAACA GTGAGGCTCT 
CTTTTCTCGC CCTCCACCTC CAGCTGAGAT TAAGCTTCCT CCACCTCCTG 
ATGCTTCTGA TGAGGAAGCT GTTGTTGCTT ACAATACCTT GCTGAATCGA 
TATGGTTTAA GCAATGGAGA ATCTGGTGGT ATGTTAGGGA AAAGGAAAGA 
GAAGACCGGA TCAGAAGCGG GAGTGGCTAA GAGGATGAAG AAAGTGAGAG 
TGAGCTTCAG GGATCAACTA GGAGGAGAGC TGGCTGAGAT TGTTGGCATG 
TCTGATGGAG CAGACGTGGA AACAGAGCCT GGTCCTATAA ATGTCAAAGA 
AGGAAGCCTC GTTGGGAAAT ATGAATCACT GGTGCGAGTG ACACTCATAC 
CCAAAGGCAA AGTGAAGGAA GAGAAAGCCT TTACAGGAGG AACAAGAGGA 
GGTGTAACAG ATCGACTCCA GGAAGCTATG AATATGTTGA AACGGGGTCC 
AAAAACAGGG ATTTACGATG ACCTTTACGG TGGTGACTCA CTTGCCAAGG 
CTGTTGGTAC GTCATGGGCT TCTGTGAGTC AACCAGCAGC TGAAACTGAA 
TGTGGAGGGG TTGGTGAAGA AGATGATAAC GACGATCTGT TTGGTGACTA 
ACTGATTTTG AACACTGAGA TTCCTTTAAG TAACTCTTCT TCTTCTCTAA 
TGCCTACATT CCATTCCAAA GGCATTGGTA TGTTGTTTCC TCTTTGTCTA 
TCCAATGGCT GCAGCAAGAA AAGAGAGCAG CTCTAAGCCC AGGCCCATTG 
TCTTGTGTTA TAAGTAAGAA CCCTGAAATT TGATATGAGC TTGAGCCTGG 
TCAGTGGTCA TTCTAGTTGT GGGTCTTAAC AGGAGATGCA TTACATAGAT 
AGTCATTACA AATAGTGTGG AGAGTAGAGA GTAGGGCCAA TGCAAATGGA 
GTGCATTTGA TTAGACCACT ACTGACTTAC AGATTCTCTC CTCAAGGCAG 
ACCAATTCCA TCAGAAGAGG ACATTTGTAC TCAAATACCT CTCCTCTCAT 
TCTTTTTCAC TTTTGCCTTT TTGCATTATT AAAACAGCAC ACTAATGATG 
TGGGTTGACT TCCCTCTCCC CCACAAAAAC AGAGATTCCA TGTGGGGGGA 
AATGGACAAC AAGTAAAACA CTTGTAAAAA TGGTAATCTG CCTCTGATGC 
TTTAAGATAT GATTTGGGGA TCAATGCATC TTTGCTTTGG GATTTGCTTT 
GTGACAGTTA GTATAAAGAA GAGAGAAGCT GAATGTGCTG CAACCAAATT 
AAAACTCTCT TTTGAGTTAA GCCTATATCC AACTCCTACT CTTCCTAGTG 
TGGTCCATTG TATTTATCAT AAGAGTAAAC TCGCTTGTAA TAAATTATAG 
TAGGGAAAGG TGGAAGACCC ACTTTTGTTT CTC

Gene models with high sequence identity

  1. AT5G47790.1 [+] show detail - SMAD/FHA domain-containing protein
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
superfamily SMAD/FHA domain 1.8e-28
Gene3D Forkhead-associated (FHA) domain 8e-20
ProfileScan Forkhead-associated (FHA) domain 13.114
HMMSmart Forkhead-associated (FHA) domain 0.000000000000069
HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
HMMPfam Forkhead-associated (FHA) domain 7e-18

See the detailed result >

AT5G47790.1

Model type
Protein coding
Short Description
SMAD/FHA domain-containing protein
Computational Description
SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-A19 introduced

  • F07346 - Specific phenotypes were NOT observed.
  • F13632 - rosette leaf::dark green / cauline leaf::decreased size / stem::present in fewer numbers in organism / stem::abnormal / root::present in greater numbers in organism
  • F14548 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found