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  3. RAFL09-22-A22

RAFL09-22-A22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05615)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-A22 - full reading 
AAACCACAGA GAGAAAGCCT CCGTCTCCCT TATCAAAGAA GAAGAAGACG 
TGTATAACAA AACACTAGAC ACATTGTGAA GATAGAAAAA AATGGAGAGA 
GCAGCAATTC TCCCGAGTGT TAATCAAAAT TACCTACTTT GTCCTTCACG 
CGCCTTCTCC ACGCGCCTCC ACTCCTCTAC TCGTAACTTA TCGCCGCCGT 
CATTTGCCTC CATCAAGCTT CAGCATTCTT CTTCCTCTGT TTCTTCTAAT 
GGTGGAATCT CTCTTACTCG ATGCAACGCT GTTTCGTCCA ATTCTTCCAG 
TACGTTGGTA ACTGAATTAG CCGACATAGA TTGGGATACC GTTGGATTTG 
GGCTTAAGCC AGCTGATTAT ATGTATGTGA TGAAATGTAA CATTGATGGA 
GAGTTCTCAA AAGGTGAGTT GCAACGTTTT GGGAATATTG AAATTAGCCC 
ATCTGCTGGT GTACTCAACT ATGGACAGGG ATTGTTTGAA GGGCTAAAAG 
CTTACAGAAA GAAAGATGGT AATAACATCC TCCTCTTTCG TCCTGAGGAG 
AATGCAAAGC GTATGAGAAA TGGTGCTGAG AGGATGTGTA TGCCTGCTCC 
AACCGTTGAG CAGTTTGTAG AAGCTGTGAC AGAAACTGTA CTAGCAAACA 
AACGTTGGGT TCCACCACCA GGTAAAGGTT CCTTATATGT TAGACCATTG 
CTAATGGGAA CAGGAGCTGT TCTTGGTCTT GCGCCTGCAC CAGAATATAC 
TTTCATTATC TATGTTTCGC CTGTTGGGAA CTACTTCAAG GAAGGTGTGG 
CACCTATCAA TTTGATTGTG GAGAATGAAT TTCACCGTGC AACTCCTGGT 
GGTACCGGAG GTGTTAAAAC CATAGGCAAT TATGCTGCAG TACTGAAGGC 
ACAGTCAATT GCGAAAGCTA AAGGATATTC CGATGTTTTG TACCTTGATT 
GCATTTACAA AAGATATCTT GAGGAGGTCT CGTCTTGCAA TATTTTCATC 
GTGAAGGACA ATGTGATATC TACTCCTGAA ATAAAAGGAA CCATTTTACC 
CGGTATTACT CGAAAAAGTA TGATAGACGT GGCTCGAACA CAAGGGTTTC 
AGGTGGAGGA ACGGAATGTG ACAGTGGATG AATTGTTAGA AGCAGACGAG 
GTTTTCTGCA CAGGAACCGC CGTGGTTGTC TCTCCTGTTG GAAGCGTCAC 
TTACAAAGGC AAAAGAGTGT CTTACGGAGA AGGTACCTTC GGAACTGTGT 
CGAAGCAACT CTACACCGTT CTGACAAGCT TGCAGATGGG TCTGATTGAA 
GACAACATGA AATGGACTGT GAATCTTAGT TAAGCCAGGC GAATGCATTG 
CATCAATTCG GCTGCTTGGT TTTGCTTTCT TTTCTTTGGT CTGTGGTTCT 
GATTCGTGAA ACTATGAGTT GGATTGTTTA GAATCTGGTT GATCTAGAAC 
TTAGCTGGTT CAAGATCATT AGATGTTGTT GCATCATACC AATAATATTA 
TCTTTAGATC T

Gene models with high sequence identity

  1. AT3G49680.1 [+] show detail - branched-chain aminotransferase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.2e-57
Gene3D no description 2.5e-34
HMMPIR Branched-chain amino acid aminotransferase II 6.8e-168
HMMPfam Aminotransferase, class IV 6.2e-32
HMMPanther Branched-chain amino acid aminotransferase II 5.4e-176
HMMPanther Aminotransferase, class IV 5.4e-176
HMMTigr Branched-chain amino acid aminotransferase II 4.1e-127
superfamily Aminotransferase, class IV 6.7e-113
PatternScan Aminotransferase, class IV, conserved site 0

See the detailed result >

AT3G49680.1

Model type
Protein coding
Short Description
branched-chain aminotransferase 3
Curator Summary
Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.
Computational Description
branched-chain aminotransferase 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12479 Blast hits to 12479 proteins in 2523 species: Archae - 154; Bacteria - 7638; Metazoa - 266; Fungi - 416; Plants - 252; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-A22 introduced

  • F02514 - Specific phenotypes were NOT observed.
  • F04108 - Specific phenotypes were NOT observed.
  • F08820 - seed::increased size / seed::increased length
  • F23522 - Specific phenotypes were NOT observed.
  • F28107 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found