1. Home
  2. Full-length cDNAs
  3. RAFL09-22-C19

RAFL09-22-C19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05617)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-C19 - full reading 
GCTCTTCTTT AATCTGCTCT GTTCTTCTCT TTCCATTTCA GCGTTGACTT 
AGTTATTGGG ATTTCTCAGA AGCAAAAATG GCGTCTCCGG CGACGTTTTC 
AATTCTCTAG AACAAAACTT AACCTTCAGA TCAACCTCGT CGAGCGAAAA 
TCTCCTTCAA AACTCTCGTT TCCTCTTTTA TTCAGAGACC AAGCAAAGTC 
AACACCAATC AGATTTCCCG TCATAAGAGC TTCATCATCT TCGTCGGCGT 
CAAATCATAA ACCTTCACTG CTTAAAACCA CCTTCATCAG CCTCACCGCA 
GCCGCAGCTC TGTTCTCAGC ATCGTTTTAC TTCGTCAACA AACGCGCCGC 
GATGACTCCA GTTGCTGTGG TAGAGACGAC ACTCGAGAAG CACCTCGAGA 
CACAATCAAA CGATGTGAAT GCTTTATCAT TGCTGACGGA AATCAAATTT 
AAGTCCGATA AACATGAGCA GGCGATTGTA TTTCTGGACC GTCTGATCGA 
GATCGAGCCA TATGAACGAA AATGGCCGGC TATGAAGGCT CGGATTCTCT 
CATACCACGG GAAAAGTGAA TCAGCAATCG AAGCTTTCGA GGAGATTCTC 
GAAAAGGATC CGATACGCGT CGATGCTTAT CATTACTTGG TGATGGAGTA 
TTACAACTCT AAACCTAAAT TAACAGAGAT AGAGAAGAGG ATCAACAAAG 
TGATTCGAAG ATGCAAGAAG GAGAAGAAGA CGAAAGAGAT TCTCGGTTTC 
AGAATGTTGA TCGCACAGAT TAGGTTTATT GAAGGAAAAT CAGTTGAAGC 
AATTCGGATT TGTGAAGAGC TAGTGAAGGA AGATCCAAAT GATTTCACTA 
TATATTTGTT TCAAGGAGTC GTGTATACAT TGATGAATAA GGGAGAGGAA 
GCTGCGAAGC AATTTGAGCA TGTTGCTAGG GTTATACCAA GGAATCACCC 
GTCTAGAGAG ACTGCCGCGA GGACCACGAA CTCAAATGAA TGGAGAGTCA 
TCGTAGCTTA CGATAATGTC TACTGCTATT TATCTACATT TGCTAGGCTT 
TCCATGGCTT CTTTGTTTAA TAAGTTTGGC TAAGTATGGT GGAAATTGAA 
AAAGTTCAAA ACTCTC

Gene models with high sequence identity

  1. AT3G09490.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
Gene3D Tetratricopeptide-like helical 4.1e-19
superfamily TPR-like 1.3e-22
HMMSmart Tetratricopeptide repeat 18
HMMSmart Tetratricopeptide repeat 320
HMMSmart Tetratricopeptide repeat 120
HMMSmart Tetratricopeptide repeat 23
ProfileScan Tetratricopeptide repeat 7.7
ProfileScan Tetratricopeptide repeat 5.694
ProfileScan Tetratricopeptide repeat 8.319
ProfileScan Tetratricopeptide repeat-containing 17.008
Coil coiled-coil 0
HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 2.2e-09

See the detailed result >

AT3G09490.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G02590.1); Has 963 Blast hits to 845 proteins in 243 species: Archae - 144; Bacteria - 518; Metazoa - 11; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-C19 introduced

  • F06649 - Specific phenotypes were NOT observed.
  • F07642 - rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / cauline leaf::decreased width / cauline leaf::epinastic / seed::present in fewer numbers in organism / root::present in greater numbers in organism / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / stem::present in greater numbers in organism / stem::abnormal / stem internode::decreased length
  • F11948 - Specific phenotypes were NOT observed.
  • F18715 - Specific phenotypes were NOT observed.
  • F29311 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found