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  3. RAFL09-22-D11

RAFL09-22-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08039)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-D11 - full reading
TTATTGCTTC TCCCTCAAAT ATTTTCTTAT TCGTTAAGGT TACAAAAATC 
AAAAAGACTC GAAGAAACCT GAGATCGAAA CCCCAGCCAT GGCGGGTCGT
TACGGATCGC AAGTCATGAC GATGACTGTG ACCAATACTC CGTCCGCAGA
TCTAGCTTTT ACTAACCTCG CTTACTGCTC TTCTTCCGAT CTCCGTCAAT
TCTCCGTTCC CGGTTCCGAT CTCTTCCTCG CCAACGTTGC CGATAGCTTC
ATTCTTTCTC TCTGTGGACA TGGAAGCATC CGTGATGGAA ATATTGCTCT
CAATGCTATT CAAAGGCGAC ACGCTAGAGT TTCGACTGGT GATATGGTAT
CTGTTAGCAG ATTTGTTCCT CCTGAAAATT TTGATCTGGC TATGCTGACG
CTGGAGTTGG AATTTGTGAA GAAAGGAACT AAAAGCGAGC AGGTTGATGC
TGCTCTCCTT TCGACCCAGC TTAAGAGGAA ATACACCAAC CAGGTCTTGA
CTGTAGGCCA GAAAGCGACA TTTGAGTATC ATGGAACTAA TTACATTCTT
ACGGTCAATC GAGCGGATGT TGAGGGTCAG GATCACACGA ACGGCATTGA
AAGAGGGTTG CTCTCTAAAG ACACGTATAT TGTGTTTGAA GCATCAAATG
CAAGTGGCAT AAAGATTGTC AACCAACGGG AAGCTGCTAG CAGCAATATA
TTCAAACATA AGGAATTTAA CCTTGAGTCG CTGGGAATAG GTGGTCTTGG
TGCAGAGTTT GCTGATATAT TTAGAAGAGC TTTTGCTTCT CGTGTATTTC
CTCCTCATGT CACCAGCAGA CTGGGAATAA AGCATGTTAA AGGGATGCTT
CTTTTTGGAC CTCCTGGTAC TGGCAAAACC CTTATGGCAC GGCAAATTGG
AAAGATGCTT AATGGAAAGG ATCCAAAGAT CGTTAATGGG CCTGAGGTGC
TGAGCAAGTT TGTTGGTGAG ACAGAAAAGA ATGTAAGAGA CTTATTTGCT
GATGCTGAGC AAGACCAGAG GACCCTTGGT GATGCTAGTG AGTTGCATGT
CATTATTTTT GATGAGATTG ATGCTATTTG CAAGTCAAGA GGTTCAACCA
GAGATGGCAC AGGTGTCCAT GATAGTATTG TAAACCAGCT TTTGACAAAG
ATAGATGGTG TGGAGGCCTT AAACAATGTT TTGCTGATTG GAATGACAAA
CAGAAAGGAT TTGCTTGATG AAGCTCTTTT AAGGCCTGGA AGATTGGAGG
TTCAGGTTGA GATAAGCCTT CCTGATGAAG CTGGGCGTCT ACAAATTCTT
CAGATTCATA CAAATAAGAT GAAGGAAAAT TCTTTCCTTG GGACTGATAT
CAATCTCCAA GAGCTTGCTG CTCGAACAAA AAATTACAGT GGTGCAGAGC
TTGAAGGTGT TGTTAAAAGT GCTACATCAT ATGCATTAAA CAGACAACTA
AGCATGGATG ATCTTACAAA GCCTGTGGAA GAAGAGAATA TCAAGATCAC
TATGGAGGAT TTTCTCCACG CTATCTATGA AGTTCAACCT GCATTTGGAG
CCTCCACAGA TGACCTAGAG CGCTGCAGAC TCAATGGGAT GGTAGATTGT
GGTCATCGGC ATAATCACAT TTACAAAAGA GCTATGCTTC TAGTCGAGCA
AGTTAAAGTT AGTACTAGAA GTCCTCTAGT CACTTGCCTT CTGGAGGGGC
CCAGTGGAAG TGGGAAAACT GCTTTAGCAG CAACAATTGG TATCGATAGT
GACTTCCCAT ATGTTAAGAT AGTTTCTGCG GAAACTATGA TTGGTCTTTC
TGAGAGCACA AAATGTGCTC ACATTGTCAA GGTCTTTGAG GATGCATATA
AATCTCCAAT GAGCATCATT ATCCTTGACG ATATTGAAAG ATTGTTGGAA
TTCATAGCAA TCGGTCCTCG CTTTTCAAAC ATAATTTCAC AGACGCTGAT
GGTCCTTCTC AAACGACTTC CTCCTAAGGG GAAGAAACTT CTCGTCTTTG
GGACAACAAG TGAAGTAACC TTCTTAGAGT CTGTTGGTAT CTCTGATTGC
TTCTCTGTCA CTCACTCTGT TCCGACACTG CAAAAAGAGG ACGCAAAGAA
GGTGCTAAAT CAGCTTAACC TCTTCTCAGA GGATGATGTT GATTCAGCTG
CAGAGGCTCT CAATGACATG CCAATCAAGA AGATTTACAT GCTAATAGAA
ATGGCTGCGC AAGGAGAAAA CGGTGGATCT GCAGAAGCTA TCTATGCTGG
GAGAGAGAAA ATCAATATCA ATCATTTCTA TGATTGCTTA GGAGACTTCA
TTCGCTTCAC TGGCTAGTCC TTTTAAAGAT ATTCTCATGG TGATCTTGTT
TTTTTGGATA CAAATTTTAC TCGGGTTATG TTATTTGGTG GTGGAGTGGA
ACTGAGAAGG GCAATTATGT TACTCGGATC ATGTTATTTT GCTTTTTTTT
TTTGCTTGTT TTTGTGTGGC TAAAACACTA TTTCTTTTGA TTGTAGTTAT
TAATTTGTGG TTTGGTTTGA CTCCTGATTT CAACTCATAT GATGGTCC

Gene models with high sequence identity

  1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
PatternScan ATPase, AAA-type, conserved site 0
HMMPfam ATPase, AAA-type, core 7.7e-38
HMMPfam ATPase, AAA-type, core 4.2e-09
HMMPfam ATPase, AAA-type, VAT, N-terminal 1.5e-06
HMMPfam Cell division protein 48, CDC48, domain 2 2.5e-05
HMMPanther VESICULAR-FUSION PROTEIN NSF 0
superfamily P-loop containing nucleoside triphosphate hyd 9.3e-51
superfamily P-loop containing nucleoside triphosphate hyd 3e-31
superfamily Cdc48 domain 2-like 9.1e-24
superfamily Aspartate decarboxylase-like fold 1.8e-16
HMMSmart ATPase, AAA+ type, core 2e-16
HMMSmart ATPase, AAA+ type, core 9.4e-06
Gene3D Aspartate decarboxylase-like fold 2.8e-12
Gene3D no description 5.1e-05
Gene3D no description 8.5e-43
Gene3D no description 1.1e-16
Gene3D no description 1.5e-36

See the detailed result >

AT4G04910.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Curator Summary
N-ethylmaleimide sensitive factor
Computational Description
N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-D11 introduced

  • F14241 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found