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  3. RAFL09-22-D11

RAFL09-22-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08039)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-D11 - full reading 
TTATTGCTTC TCCCTCAAAT ATTTTCTTAT TCGTTAAGGT TACAAAAATC 
AAAAAGACTC GAAGAAACCT GAGATCGAAA CCCCAGCCAT GGCGGGTCGT 
TACGGATCGC AAGTCATGAC GATGACTGTG ACCAATACTC CGTCCGCAGA 
TCTAGCTTTT ACTAACCTCG CTTACTGCTC TTCTTCCGAT CTCCGTCAAT 
TCTCCGTTCC CGGTTCCGAT CTCTTCCTCG CCAACGTTGC CGATAGCTTC 
ATTCTTTCTC TCTGTGGACA TGGAAGCATC CGTGATGGAA ATATTGCTCT 
CAATGCTATT CAAAGGCGAC ACGCTAGAGT TTCGACTGGT GATATGGTAT 
CTGTTAGCAG ATTTGTTCCT CCTGAAAATT TTGATCTGGC TATGCTGACG 
CTGGAGTTGG AATTTGTGAA GAAAGGAACT AAAAGCGAGC AGGTTGATGC 
TGCTCTCCTT TCGACCCAGC TTAAGAGGAA ATACACCAAC CAGGTCTTGA 
CTGTAGGCCA GAAAGCGACA TTTGAGTATC ATGGAACTAA TTACATTCTT 
ACGGTCAATC GAGCGGATGT TGAGGGTCAG GATCACACGA ACGGCATTGA 
AAGAGGGTTG CTCTCTAAAG ACACGTATAT TGTGTTTGAA GCATCAAATG 
CAAGTGGCAT AAAGATTGTC AACCAACGGG AAGCTGCTAG CAGCAATATA 
TTCAAACATA AGGAATTTAA CCTTGAGTCG CTGGGAATAG GTGGTCTTGG 
TGCAGAGTTT GCTGATATAT TTAGAAGAGC TTTTGCTTCT CGTGTATTTC 
CTCCTCATGT CACCAGCAGA CTGGGAATAA AGCATGTTAA AGGGATGCTT 
CTTTTTGGAC CTCCTGGTAC TGGCAAAACC CTTATGGCAC GGCAAATTGG 
AAAGATGCTT AATGGAAAGG ATCCAAAGAT CGTTAATGGG CCTGAGGTGC 
TGAGCAAGTT TGTTGGTGAG ACAGAAAAGA ATGTAAGAGA CTTATTTGCT 
GATGCTGAGC AAGACCAGAG GACCCTTGGT GATGCTAGTG AGTTGCATGT 
CATTATTTTT GATGAGATTG ATGCTATTTG CAAGTCAAGA GGTTCAACCA 
GAGATGGCAC AGGTGTCCAT GATAGTATTG TAAACCAGCT TTTGACAAAG 
ATAGATGGTG TGGAGGCCTT AAACAATGTT TTGCTGATTG GAATGACAAA 
CAGAAAGGAT TTGCTTGATG AAGCTCTTTT AAGGCCTGGA AGATTGGAGG 
TTCAGGTTGA GATAAGCCTT CCTGATGAAG CTGGGCGTCT ACAAATTCTT 
CAGATTCATA CAAATAAGAT GAAGGAAAAT TCTTTCCTTG GGACTGATAT 
CAATCTCCAA GAGCTTGCTG CTCGAACAAA AAATTACAGT GGTGCAGAGC 
TTGAAGGTGT TGTTAAAAGT GCTACATCAT ATGCATTAAA CAGACAACTA 
AGCATGGATG ATCTTACAAA GCCTGTGGAA GAAGAGAATA TCAAGATCAC 
TATGGAGGAT TTTCTCCACG CTATCTATGA AGTTCAACCT GCATTTGGAG 
CCTCCACAGA TGACCTAGAG CGCTGCAGAC TCAATGGGAT GGTAGATTGT 
GGTCATCGGC ATAATCACAT TTACAAAAGA GCTATGCTTC TAGTCGAGCA 
AGTTAAAGTT AGTACTAGAA GTCCTCTAGT CACTTGCCTT CTGGAGGGGC 
CCAGTGGAAG TGGGAAAACT GCTTTAGCAG CAACAATTGG TATCGATAGT 
GACTTCCCAT ATGTTAAGAT AGTTTCTGCG GAAACTATGA TTGGTCTTTC 
TGAGAGCACA AAATGTGCTC ACATTGTCAA GGTCTTTGAG GATGCATATA 
AATCTCCAAT GAGCATCATT ATCCTTGACG ATATTGAAAG ATTGTTGGAA 
TTCATAGCAA TCGGTCCTCG CTTTTCAAAC ATAATTTCAC AGACGCTGAT 
GGTCCTTCTC AAACGACTTC CTCCTAAGGG GAAGAAACTT CTCGTCTTTG 
GGACAACAAG TGAAGTAACC TTCTTAGAGT CTGTTGGTAT CTCTGATTGC 
TTCTCTGTCA CTCACTCTGT TCCGACACTG CAAAAAGAGG ACGCAAAGAA 
GGTGCTAAAT CAGCTTAACC TCTTCTCAGA GGATGATGTT GATTCAGCTG 
CAGAGGCTCT CAATGACATG CCAATCAAGA AGATTTACAT GCTAATAGAA 
ATGGCTGCGC AAGGAGAAAA CGGTGGATCT GCAGAAGCTA TCTATGCTGG 
GAGAGAGAAA ATCAATATCA ATCATTTCTA TGATTGCTTA GGAGACTTCA 
TTCGCTTCAC TGGCTAGTCC TTTTAAAGAT ATTCTCATGG TGATCTTGTT 
TTTTTGGATA CAAATTTTAC TCGGGTTATG TTATTTGGTG GTGGAGTGGA 
ACTGAGAAGG GCAATTATGT TACTCGGATC ATGTTATTTT GCTTTTTTTT 
TTTGCTTGTT TTTGTGTGGC TAAAACACTA TTTCTTTTGA TTGTAGTTAT 
TAATTTGTGG TTTGGTTTGA CTCCTGATTT CAACTCATAT GATGGTCC

Gene models with high sequence identity

  1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
PatternScan ATPase, AAA-type, conserved site 0
HMMPfam ATPase, AAA-type, core 7.7e-38
HMMPfam ATPase, AAA-type, core 0.0000000042
HMMPfam ATPase, AAA-type, VAT, N-terminal 0.0000015
HMMPfam Cell division protein 48, CDC48, domain 2 0.000025
HMMPanther VESICULAR-FUSION PROTEIN NSF 0
superfamily P-loop containing nucleoside triphosphate hyd 9.3e-51
superfamily P-loop containing nucleoside triphosphate hyd 3e-31
superfamily Cdc48 domain 2-like 9.1e-24
superfamily Aspartate decarboxylase-like fold 1.8e-16
HMMSmart ATPase, AAA+ type, core 2e-16
HMMSmart ATPase, AAA+ type, core 0.0000094
Gene3D Aspartate decarboxylase-like fold 0.0000000000028
Gene3D no description 0.000051
Gene3D no description 8.5e-43
Gene3D no description 1.1e-16
Gene3D no description 1.5e-36

See the detailed result >

AT4G04910.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Curator Summary
N-ethylmaleimide sensitive factor
Computational Description
N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-D11 introduced

  • F14241 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found