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  3. RAFL09-22-D24

RAFL09-22-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08041)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-D24 - full reading 
ATACAAAAAC TGAAACCTTT CTCTATTTAT CTCTCTATAC ACAACAATGG 
CGGTCTTCGT TTTATCTCTA CTCATACTCT CTTCCTTCTC AGCCATTCCA 
TTCACTTATG CAGATTCTGG AATGATCGGA GTTAACTACG GCCGTATAGC 
AGACAATCTT CCGGCACCGG AGAAAGTAGT TGAGCTACTG AAAACACAAG 
GAATCAACCG CATCAAGCTT TACGACACCG AGACAACTGT ACTAACCTCA 
CTCGCGAACT CCGGAATCAA AGTCGTTGTC TCTCTCCCCA ACGAAAACCT 
CGCTTCCGCC GCCGCAGATC AGAGCTACAC CGACACTTGG GTTCAGGACA 
ACATAAAGAA GTACATTCCA GCGACGGATA TCGAAGCAAT CGCCGTTGGG 
AACGAAGTGT TCGTCGATCC GAGGAACACG ACGACGTATC TCGTTCCAGC 
TATGAAGAAT GTTCAAAGCT CTCTCGTCAA GTTCAATCTC GACAAATCCA 
TTAAGATCTC GTCGCCGATT GCTTTAAGCG CGTTGGCGAG TTCGTATCCA 
CCGTCGGCTG GTTCGTTTAA ACCGGAGTTA ATCGAACCGG TTATTAAACC 
GATGCTTGAT CTCCTCCGCA AAACGTCGTC GCATCTTATG GTGAATGCTT 
ATCCTTTCTT TGCTTACGCA GCTAACGCCG ATAAGATCTC GTTGGATTAC 
GCGTTGTTTA AGGAGAACGC CGGGAATGTT GATTCCGGTA ACGGTTTGAA 
GTATAACAGT CTCTTAGACG CTCAGATCGA CGCCGTTTTC GCCGCAATGT 
CCGCCGTTGG ATTTAACGAC GTTAAGCTTG TGGTGACAGA GACAGGCTGG 
CCTTCTGCCG GAGACGAGAA CGAGATTGGT GCTGGTTCGG CTAACGCGGC 
GGCGTATAAC GGCGGGTTAG TTAAAAGAGT GTTGACGGGA AACGGAACGC 
CGTTAAAACC GAAGGAGCCA CTAAACGTTT ATCTGTTCGC TCTGTTTAAC 
GAGAATCAGA AAACGGGTCC GACTTCTGAG AGAAACTACG GGTTGTTTTA 
CCCAAACGAG AACAAAGTGT ATGACGTTTC GCTCAACGGT AAGTCAACGC 
CGGTCAACGA TAACAAAGAG AAGGTTGTTC CGGTGAAACC GTCGCTCGTG 
GGACAGACGT GGTGTGTGGC GAATGGTAAA ACGACGAAGG AGAAGCTTCA 
GGAAGGTCTC GACTACGCTT GTGGCGAAGG AGGTGCTGAT TGCCGTCCGA 
TTCAACCGGG TGCCACGTGT TATAATCCTG AATCGTTAGA AGCTCACGCT 
TCCTACGCGT TCAACAGTTA CTATCAGAAG AACGCACGTG GAGTTGGCAC 
GTGTAATTTT GGTGGTGCAG CGTACGTGGT CTCGCAACCT CCTAAGTATG 
GGAAATGCGA GTTTCCAACA GGGCATTGAA ATGGATATAG AGAAGAAGAG 
GATCGTGCGG ATTTATTTAC GTTATTTATT TTGATACATT GTTCTTTTGT 
CATTCGAGTA TATGATTTGC GTATATTTAT TTTTATTATT GTATATTTGG 
TTGGTTTCAT CGGATAAATA GTCAGATTTT CTTTCCCCC

Gene models with high sequence identity

  1. AT5G55180.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
PatternScan Glycoside hydrolase, family 17 0
HMMPfam Glycoside hydrolase, family 17 2.1e-100
HMMPfam X8 6.2e-31
Gene3D Glycoside hydrolase, subgroup, catalytic core 3.5e-111
superfamily Glycoside hydrolase, catalytic core 7.9e-105
HMMSmart X8 2.4e-47

See the detailed result >

AT5G55180.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-D24 introduced

  • F04208 - Specific phenotypes were NOT observed.
  • F14849 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found