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  3. RAFL09-22-G20

RAFL09-22-G20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05626)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-G20 - full reading 
AACATGCTTC AAAAATGTTA TTCTTTCTTT ATTCATCATC CGTCCCTAAT 
AATCCGATTT CATTGTCTTG CATCAGAACC AAAACAAGAC ATTAACTGAT 
CAATCGGAGA AAGACAAAAC CCTAAAGAAA CCAACCAAGA TTCTTCCATG 
TCCAAGATGC AACAGCATGG AGACTAAGTT CTGTTACTAC AACAACTACA 
ACGTAAACCA ACCTCGCCAT TTTTGTAAAG CTTATCAGAG ATATTGGACC 
TCAGGTGGGA CCATGAGAAG TGTTCCAATC GGAGCAGGAC GGCGCAAGAA 
CAAGAACAAC TCACCAACTT CACATTACCA CCATGTGACT ATCTCCGAAA 
CAAATGGTCC GGTCCTTAGT TTCAGCCTCG GAGATGATCA AAAGGTCTCG 
AGTAATAGGT TTGGTAATCA AAAGCTAGTT GCTAGGATAG AGAACAATGA 
CGAGCGCTCT AATAACAACA CTTCGAACGG TTTGAATTGT TTTCCGGGAG 
TTTCGTGGCC GTACACGTGG AATCCTGCGT TTTACCCGGT TTACCCTTAT 
TGGAGCATGC CAGTGTTGTC TTCTCCGGTA AGTTCAAGTC CTACTTCTAC 
TCTTGGTAAG CATTCGAGAG ACGAAGACGA GACGGTGAAG CAAAAACAGA 
GGAATGGATC TGTATTGGTT CCAAAGACTT TGAGAATTGA TGATCCTAAT 
GAAGCTGCAA AGAGTTCGAT ATGGACAACA CTTGGGATCA AGAACGAAGT 
TATGTTCAAT GGGTTTGGTT CGAAGAAAGA GGTTAAGCTC AGTAACAAAG 
AAGAAACAGA GACCTCACTT GTTCTTTGTG CAAACCCTGC TGCGTTATCA 
AGATCAATCA ATTTCCATGA GCAGATGTGA TTGTATACAT ATGATATATA 
CGTGTATGTA TGTATAGATG TGGTGGAAGA TTAAGTTAGA TCCATCAAAA 
TCTGACTTTT TTGTTCTTTC GTTGTGGCTT ACATGAAGCT TTATAATAGC 
TTTTGTACCA TATACTTTTT AGTCTTTTAA GTTTGATTTT TGTTGTAAGA 
TTAAATACGA TGAAATAAAA GTTCTTTTTG ACCAAT

Gene models with high sequence identity

  1. AT5G62430.1 [+] show detail - cycling DOF factor 1
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Zinc finger, Dof-type 7.9e-34
BlastProDom Zinc finger, Dof-type 9e-37
ProfileScan Zinc finger, Dof-type 26.878

See the detailed result >

AT5G62430.1

Model type
Protein coding
Short Description
cycling DOF factor 1
Curator Summary
Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
Computational Description
cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1125; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-G20 introduced

  • F14108 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found