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  3. RAFL09-22-H01

RAFL09-22-H01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09673)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-H01 - full reading 
AAAAGAACCA AAACAAAAAA AAAGTTGACA TGGACCAAAA AAGCTTTTTC 
CGGTTGATTT TTCTCATAGT CACAGCTGGT TTCATCATCT CCTTCACTTC 
CACTAACTTC CCTCACGCGC CGACGAGGCT TCTTGATTGC ACCGACTCTT 
CTTCTTCACC TCTTTGCGCT TCGAGAAACT TTCTTTTCAA CAAACAACAA 
CCACGACCTA TTCCTAAACA TGATCCTAAA CCAAATACCA AAAACCATGA 
TCACGTGTCC GATACACCAA ACCATCCTCT AGACCCACTC ACGGTGTCGG 
AGATTAACAA AATCCGATCA ATACTCTCTT CTCACGCGCT ATTCACTTCC 
GGTACACCAC ACGCGCTCCA CACCGTCGTT CTTGAAGAGC CTGAGAAGAA 
TCTTGTCCGT CACTGGGAAA AAGGGAACCC ACTTCCTCCG AGGAAAGCTT 
CCGTCATCGC ACGTGTTGGC GCGGACACGC ACGTGCTCAC CGTTGATATC 
TCTACGGGTC GGGTAGATTC AGAGAATAGC CCGGTTCGTG TTTCTGGTTA 
CCCGATGATG ACTATAGAAG AGATGAACGA TATCACTGTT GTACCATTTT 
CAAACGCGGA TTTCAACCGT ACGATCATCT CTCGTGGAGT TAATCTAACG 
GACGTGATTT GTTTCCCAAT CTCTTGTGGT TGGTTTGGTA ATAAAGAAGA 
AAACGCGAGG GTAATTAAAA GTCAGTGTTT CATGACACAA GGAACACCTA 
ACTTCTACAT GCGTCCTATC GAAGGTTTAA CCATTCTCAT CGATTTAGAT 
ACAAAGCAAG TGATCGAGAT AACCGATACA GGTCGGGCTA TACCCATACC 
CGGTTCAACC AATACCGATT ACCGCTTCCA AAAGCTCGCA ACCACCGACA 
AAACTCGGCC TCTAAACCCG ATATCCATTG AGCAGCCACG TGGTCCAAGC 
TTCGTGATAG AGGACAACCA TCTAGTGAAA TGGGCAAATT GGGAATTTCA 
TCTAAAACCT GACCCGAGAG CAGGTGTGGT AATATCACGG GTAAGAGTAC 
ACGACCCGGA TACTCATGAG ACACGTGACG TGATGTACAA AGGTTTCGTG 
TCTGAACTTT TTGTTCCGTA CATGGATCCA TCGGACGCGT GGTACTTTAA 
GACTTACATG GACGCAGGGG AATACGGGTT CGGGTTACAA GCCATGCCAC 
TCGTACCGCT TAATGATTGT CCACGAAACG CAGCCTATAT GGACGGAGTT 
TTCGCCGCAG CCGATGGAAC ACCGTTCGTG AGAGAAAACA TGGTTTGTAT 
CTTTGAGAGT TACGCCGGAG ATATTGGGTG GCGTCACTCC GAAAGCCCCA 
TCACCGGTAT ACCGATAAGG GAAGTGAGAC CAAAAGTGAC GCTAGTGGTA 
CGAATGGCAG CTTCGGTAGG TAACTATGAT TACATCATTG ATTACGAGTT 
CCAAACTGAT GGGCTTATAA AAGCTAAGGT CGGGCTAAGT GGAATACTAA 
TGGTGAAAGG GACAACATAT CAAAACAAAA ACCAAGTGGA GAAAGATAAA 
GACGGTAATG AAGAAGAGCT TCACGGCACG CTTCTGTCTG AAAATGTAAT 
TGGAGTAATA CACGATCACT ACGTCACTTT TTACCTTGAC CTTGACGTCG 
ATGGCCCGGA CAACTCATTT GTTAAAGTGA ATCTCAAGAG GCAAGAGACC 
GAGCCAGGCG AGTCACCGAG GAAAAGTTAC CTAAAAGCTG TTAGGAACAT 
TGCGAAAACC GAAAAGGATG GTCAGATCAA GCTTAGCTTG TACGATCCAT 
CAGAATTCCA CGTCATCAAC TCTGGTAAAA CCACTCGGGT CGGAAACCCG 
ACGGGTTATA AGGTCGTTCC TAGAACGACG GCAGCTAGTC TACTTGACCA 
TGATGATCCG CCGCAGAAGA GAGGAGCTTT TACCAACAAC CAAATTTGGG 
TCACTCCGTA CAATAAGTCG GAGCAATGGG CTGGTGGCTT GTTCACTTAC 
CAAAGCCATG GTGATGACAC TCTTGCAGTT TGGTCAGACA GGGATAGAGA 
CATAGAGAAC AAGGATATAG TTGTGTGGTA TACACTTGGT TTCCATCACA 
TTCCATGTCA AGAAGATTTT CCGATAATGC CCACGGTTTC TTCGAGTTTC 
GATTTGAAGC CCGTAAACTT TTTCGAGCGC AATCCAATCC TCAGTGCCGC 
TCCAAACTTT GAACATGATC TCCCGGTTTG TGGAGTTCAA TCTGTTTCTG 
CTTGAGAAGA GTAAAGTACG AAATAAAGAA ATAGCAACTT TTGTATATTT 
GTGTTACTCT CAAGGTACAC AATGTAATTT GTGGCCTTAA AACTGGTAAT 
TAGATGTATA AATGTAAATG CTAATGTATA TGTGTTTAAA CGAGAATCCA 
TATATTCATG CGGATTATGG

Gene models with high sequence identity

  1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther COPPER AMINE OXIDASE 0
HMMPanther Copper amine oxidase 0
superfamily Copper amine oxidase, C-terminal 1.3e-150
superfamily Copper amine oxidase, N-terminal 1.3e-37
superfamily Copper amine oxidase, N-terminal 6.2e-21
Gene3D Copper amine oxidase, N2/N3-terminal 4.2e-24
Gene3D Copper amine oxidase, N2/N3-terminal 9.2e-32
Gene3D Copper amine oxidase, C-terminal 2.8e-144
PatternScan Copper amine oxidase 0
PatternScan Copper amine oxidase 0
HMMPfam Copper amine oxidase, C-terminal 9.6e-152
HMMPfam Copper amine oxidase, N3-terminal 1.9e-33
HMMPfam Copper amine oxidase, N2-terminal 7e-30

See the detailed result >

AT4G12290.1

Model type
Protein coding
Short Description
Copper amine oxidase family protein
Computational Description
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-H01 introduced

  • F04042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found