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  3. RAFL09-22-H23

RAFL09-22-H23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05632)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-H23 - full reading 
AATTTCCACC GATCTTCTCC TCATAAAAAC ACCTCTTCCT CAACGAATTT 
TTTATCCATG AGTCGCATAA TGGGATTGTT CGATCTCGAG AAACACTTCG 
CCTTCTACGG TGCTTACCAT AGCAATCCGA TCAACATTCT AATCCACATC 
ATCTTCGTTT GGCCAATCTT CTTCTCAGTT TTACTTCTCC TCCACTCGTC 
GACCCCAATT TTCGACCCCT CTCAATTAGG GTTTTCTCAA TCGTTGACCC 
TCGACGGCGT TTTGCGATTT AACGTTGGGT TTATATTCGC CTTGATTTAT 
GCTCTGTTCT ATATCGGTTT GGATAAGAAA TCTGGATTTG TAGCTGCTCT 
TATGTGTTTC TCTTGCTGGG TTGGTTCCAG TTTTCTTGCT GTTCGACTAG 
GATCTTCTCT TGCCTTAAAG GTTGGGTTAG CATCTCAGCT GTTATGTTGG 
ACCGGGCAGT TCGTTGGCCA TGGAGTATTC GAGAAACGGG CACCTGCGCT 
GTTAGACAAT TTACTCCAAG CTTTTCTCAT GGCTCCTTTC TTCGTGTTGC 
TCGAGGTTCT TCAATCGGTT TTCGGGTATG AACCATATCC CGGTTTTCAA 
GCGCGTGTGA ATGCCAAGGT AGAAAGTGAC ATCAAGGAAT ATAGGGCAAA 
GAAGCAGAAG AAGAATAAGA TCACATAAGC TTGGATTATA TATAACTGAA 
GAACTTGAAC CCATTGTCGT GTTTCTATAA CCGAAATGAT AATAAGACCA 
CCATGATCCA TGGATTGATG TATTTGTGTG TAAACTATGT TTCAATATAT 
TGAATATAAT ATGTTTCAGC C

Gene models with high sequence identity

  1. AT1G18720.1 [+] show detail - Protein of unknown function (DUF962)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam DUF962 2.9e-33

See the detailed result >

AT1G18720.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF962)
Computational Description
Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-H23 introduced

  • F13733 - Specific phenotypes were NOT observed.
  • F17415 - Specific phenotypes were NOT observed.
  • F24513 - Specific phenotypes were NOT observed.
  • F27709 - Specific phenotypes were NOT observed.
  • F28350 - seed::increased length
  • F30321 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found