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  3. RAFL09-22-J23

RAFL09-22-J23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05647)

full reading [+] show sequence

Nucleotide sequence: RAFL09-22-J23 - full reading 
AAATGAAAAT CGCTGGGCTC TCGCTGTCAA CGCTGGGCGT GAGTGAGATC 
TAACAATCGG TAGCGAATTT TGTAAATTTT GTTCCGGTTT TGAAGTCTCA 
ATCTCGGGGT TCCGGTTTTA GCAACTACTT CTTCTGACAT TTCAGCTGTT 
CTAGTTGATC TTTATATACT TTATATGATC TGGGATTTTG AAGAGTTTTT 
AGGGAGGAAC CAAAATTTCT GAGAGAGAAA AATGAAGTTA TCGAGCTGCG 
TTTTGATCTT CCTTCTATGT AACACATTCT CCTCGATTTC TGCTTTCCGT 
CTGAGTCGGA GTCAACCAAC TGAGCGAATT TCAGGTAGTG CTGGTGATGT 
GTTGGAAGAT GATCCCGTGG GAAGACTGAA AGTCTTTGTT TATGAGCTTC 
CAAGTAAATA CAACAAGAAG ATACTTCAGA AGGATCCGAG ATGTCTAAAC 
CACATGTTTG CTGCTGAGAT ATATATGCAA CGGTTTCTTT TATCTAGCCC 
AGTTCGAACA CTTAATCCCG AGGAAGCTGA TTGGTTCTAC GTACCTGTGT 
ACACCACTTG TGATCTCACG CCTAATGGGC TTCCTCTTCC TTTTAAATCT 
CCACGAATGA TGAGAAGTGC CATTCAGCTT ATTGCTTCCA ATTGGCCATA 
CTGGAATCGC ACAGAAGGAG CAGACCACTT CTTTGTTGTG CCTCATGACT 
TTGGAGCCTG TTTCCATTAT CAAGAAGAGA AGGCAATAGG AAGAGGAATA 
CTACCCTTGC TTCAACGAGC TACACTGGTG CAGACATTTG GACAAAGGAA 
TCATGTTTGC TTGAAAGAAG GTTCAATCAC TGTTCCTCCA TATGCTCCAC 
CACAGAAGAT GCAGTCACAC TTAATTCCCG AAAAAACTCC TCGATCCATC 
TTCGTTTATT TCAGAGGATT GTTTTATGAT GTGGGAAATG ACCCTGAGGG 
TGGTTATTAT GCGAGGGGTG CAAGAGCAGC TGTATGGGAA AACTTCAAAG 
ACAATCCGCT GTTTGACATC TCAACAGAGC ACCCAACAAC ATATTATGAG 
GACATGCAGA GAGCAATCTT CTGCCTATGC CCACTTGGAT GGGCCCCATG 
GAGTCCAAGA CTGGTGGAAG CAGTGATATT CGGTTGCATC CCTGTGATCA 
TAGCAGACGA CATCGTGTTA CCTTTTGCAG ATGCAATCCC TTGGGAAGAT 
ATTGGTGTGT TTGTGGATGA GAAAGATGTC CCTTACCTGG ACACAATACT 
CACATCGATC CCACCAGAGG TTATACTGAG AAAACAGAGG TTGTTGGCAA 
ACCCGTCGAT GAAACAAGCC ATGCTGTTCC CGCAACCGGC TCAACCAGGG 
GATGCGTTTC ATCAAGTATT GAATGGGTTG GCTCGTAAGC TGCCTCATGA 
GAGGAGTGTG TATCTGAGAC CAGGTGAGAA GCTGTTGAAC TGGACGGCAG 
GACCGGTCGC TGATCTGAAA CCTTGGTAAG GACCAGTGTT GGAATTTGAT 
TGAATGAGCT ATTGTTTGGT TGGTTTCTGT CTTCTCGTGT CTGTATTTTG 
TAGAATCATA ACTTTTTTTT GCTATGTAGA AGGGAAAAAG CTTTGTCATT 
GTAATGTAAC TAGAATCCTT TTGACATCTC ACGAGAAAGA CAAGTAAAAG 
AAAAATTATT GTTG

Gene models with high sequence identity

  1. AT5G61840.1 [+] show detail - Exostosin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther EXOSTOSIN-RELATED 3.4e-152
HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 3.4e-152
HMMPfam Exostosin-like 3.5e-73

See the detailed result >

AT5G61840.1

Model type
Protein coding
Short Description
Exostosin family protein
Computational Description
GUT1; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G27440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-22-J23 introduced

  • F02740 - Specific phenotypes were NOT observed.
  • F08042 - Specific phenotypes were NOT observed.
  • F24204 - Specific phenotypes were NOT observed.
  • F28120 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found