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  3. RAFL09-23-D14

RAFL09-23-D14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05714)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-D14 - full reading 
AAAACACAAA CCCTATCTTT TCTTCTTCTT CTTCTTCGTT CAGTCTTCAC 
TTTCTTTTCT TTTCTCCGCC ACCACACAAA TACATTCTTC ATTCTTTGTA 
ACTTTCACGC TATTCTTCCT CAATATATTC ATTCGACCTC CTCTCTTCAT 
TCTTAATTTC TCAAAAATCT TATCTTTCTC CCTCATTTTT CCCGTCGAGG 
GTTCCTTAAT CTCCTTCCTA GGAACGTTTC ATCGATTTCA TATTTGCTTT 
CCTTAATCCA CAACGTTTCT TCCTTCGTTT TTTTCTGCAA TTTTGTTTTC 
CTTTACACCA AATTCATCTC TTAGTCTTGT CCAATTTTCG ATTTTTTTTC 
CGACAATCCT GATTGTTTGT TTTTTTATCT GTCGGGATTT CGAATGGCGC 
TTGCGTATGA TCCTCTCTTC ATTACATCGG ACAAATCTTT GTCCGCCTTT 
GATGTTGCCT CTTCACCGCC TCAGCCCATG AATTTAACAC AAGACGAGCT 
CAAACGTATC GCCGCTTACA AAGCCGTGGA ATTCGTCGAG TCCGGCATGG 
TTCTCGGTCT CGGAACCGGC TCCACCGCCA AACACGCCGT CGACCGAATC 
GGCGAGCTTC TCCGTCAAGG CAAACTCGAG AACATCGTTG GTATACCAAC 
GTCTAAGAAG ACGCAGGAGC AGGCTCTGTC TCTCGGCATC CCTCTCTCTG 
ATCTCGACGC ACACCCTGTC ATCGATCTCT CCATCGACGG CGCAGACGAG 
GTCGACCCTT TTCTCAACCT GGTAAAAGGC AGAGGAGGGT CTCTGCTTCG 
AGAGAAGATG ATCGAAGGAG CTTCTAAGAA GTTTGTGGTG ATTGTTGACG 
ACTCCAAGAT GGTGAAGCAT ATTGGTGGAA GCAAGCTTGC TCTTCCGGTG 
GAGATAGTGC CCTTTTGCTG GAAGTTCACG GCGGAGAAGC TCCGGAGTCT 
GCTGGAAGGA TACGGGTGTG AAGCGAATCT TCGGTTGGGA GAGAAAGGGA 
AGGCCTTTGT GACAGACAAT GGGAATTACA TAGTGGATAT GCATGTGGAA 
GAGGATATGG GAGATTTGGG AGCAGTGAGT GATGCGATTC TGAGGCTACC 
GGGAGTAGTG GAACATGGGA TGTTTCTGGA TATGGCTTCT ACTGTTATCA 
TTGCAGGTGA GCTTGGTGTT AAGATCAAGA ACAAACACTG AAACACACAC 
CACACCTCTT CTCGTTGATT TTGGCCTTTA TGTATTAGGA GACAGAGGAT 
TATGGTTTGC TCTATGGTTT AGATGATATG AGATTAGGTT TTGGATGATG 
TCACTGTGAG GAGGATGAAT GACTTTCTTT TGACAGAGTT TTGGATGCAT 
TGACATCGTC GTCATCATCA TCAATCAATC TTGTAAACAG CATTTTGCTT 
CTTCATTGCC TTTGTTGTGT TTGAATGCTC TTCTTTTACT ACTGGGCCTG 
TGTTGGGCTT TGCT

Gene models with high sequence identity

  1. AT2G01290.1 [+] show detail - ribose-5-phosphate isomerase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribose 5-phosphate isomerase, type A 4.9e-135
HMMPfam Ribose 5-phosphate isomerase, type A 3.3e-63
superfamily NagB/RpiA/CoA transferase-like 1.5e-42
superfamily D-ribose-5-phosphate isomerase (RpiA), lid do 3.2e-19
Gene3D no description 9.9e-49
HAMAP Ribose-5-phosphate isomerase, type A, subgroup 31.386
HMMPanther Ribose 5-phosphate isomerase, type A 7.1e-118

See the detailed result >

AT2G01290.1

Model type
Protein coding
Short Description
ribose-5-phosphate isomerase 2
Curator Summary
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-D14 introduced

  • F16528 - Specific phenotypes were NOT observed.
  • F18206 - Specific phenotypes were NOT observed.
  • F19814 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

21 mutant lines found