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  3. RAFL09-23-E17

RAFL09-23-E17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05719)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-E17 - full reading 
ATCCCAAAAA TAAAAAGAGT ATATCTCTCA CACACATACA CAAACTTGAC 
AGTTTTTTAA TTTCTCTGTT AGTGAACTCA AACCTTCCCA TTTCCATGGA 
CACCAAAATC GGATCGATCG ATGATTGCAA GCCGACGAAC GGCGACGTCT 
GTAGTCCAAC AAACGGCACC GTCGCAACAA TCCACAACTC TGTTCCTTCC 
TCCGCTATCA CCATCAACTA CTGCGACGCG ACTCTCGGCC GTCACTTAGC 
TCGTCGTCTC GTCCAAGCCG GCGTTACGGA TGTTTTCTCT GTTCCCGGAG 
ATTTCAACCT CACTTTGCTT GATCACCTCA TGGCTGAGCC GGACCTCAAC 
CTAATCGGAT GTTGTAACGA GCTAAACGCC GGTTACGCTG CCGACGGTTA 
CGCTAGATCT CGTGGAGTCG GCGCTTGCGT TGTTACCTTC ACCGTTGGTG 
GACTCAGCGT TTTAAACGCG ATCGCTGGTG CTTACAGCGA GAATCTTCCT 
CTTATCTGTA TCGTCGGAGG TCCTAACTCT AACGATTATG GCACTAACCG 
GATTCTTCAT CACACCATTG GATTACCTGA TTTTAGCCAA GAGCTTAGGT 
GCTTCCAAAC GGTGACTTGT TATCAGGCGG TGGTGAACAA TTTAGATGAT 
GCTCATGAAC AGATTGATAA AGCAATATCA ACAGCTTTGA AAGAGAGCAA 
GCCTGTGTAT ATAAGTGTAA GCTGTAACTT AGCAGCGATT CCTCATCATA 
CATTTAGCCG TGATCCTGTC CCTTTTTCTC TAGCTCCAAG ATTGAGCAAC 
AAGATGGGTT TAGAAGCTGC GGTGGAAGCA ACATTGGAGT TTCTGAATAA 
GGCTGTGAAG CCAGTTATGG TTGGTGGTCC TAAGTTGCGT GTGGCTAAAG 
CTTGTGATGC CTTTGTTGAG CTAGCTGATG CTTCAGGCTA TGCTTTGGCG 
ATGATGCCTT CTGCGAAAGG CTTTGTACCA GAGCACCATC CTCATTTCAT 
TGGAACTTAT TGGGGAGCAG TGAGCACTCC TTTTTGCTCT GAGATTGTGG 
AATCTGCGGA TGCTTACATT TTTGCAGGTC CAATCTTCAA CGACTATAGC 
TCTGTTGGTT ACTCGCTTCT CCTCAAGAAA GAAAAAGCCA TCGTTGTGCA 
ACCTGATCGT ATCACTGTGG CCAATGGTCC TACTTTTGGT TGCATTTTGA 
TGAGCGATTT CTTCAGGGAA TTGTCTAAGA GGGTGAAGCG TAACGAGACT 
GCATATGAGA ACTACCATAG GATCTTTGTC CCTGAAGGTA AGCCATTGAA 
GTGTGAATCA AGAGAGCCAT TGAGAGTTAA CACAATGTTC CAGCACATTC 
AGAAGATGCT CTCTAGTGAA ACCGCTGTGA TTGCTGAAAC CGGTGATTCT 
TGGTTCAATT GCCAAAAACT AAAGCTGCCA AAAGGATGTG GGTACGAGTT 
TCAGATGCAG TATGGATCGA TTGGGTGGTC TGTTGGTGCA ACTCTAGGAT 
ACGCACAGGC ATCACCAGAA AAGCGAGTGT TGGCATTCAT CGGTGATGGG 
AGTTTCCAAG TCACGGTTCA GGACATATCA ACAATGCTGC GTAATGGACA 
GAAGACGATC ATCTTCTTGA TTAACAATGG TGGCTACACC ATTGAAGTAG 
AGATTCATGA CGGTCCTTAT AACGTGATTA AGAACTGGAA CTACACTGGT 
CTCGTTGACG CCATTCATAA CGGTGAAGGC AATTGCTGGA CTGCAAAGGT 
GAGATACGAA GAGGAGTTAG TGGAGGCGAT TACGACAGCG ACGACGGAGA 
AGAAAGATTG TCTATGTTTC ATAGAAGTGA TTCTTCACAA GGATGATACG 
AGCAAAGAGT TGCTTGAGTG GGGCTCACGC GTCTCTGCTG CTAACAGCCG 
TCCTCCCAAT CCTCAGTAGA AGAAGCAACA CAGAATCTTC AATGCTTCTT 
ACCAATTTAG TGACATTTTC TGATAAGTGT TGATTTTTCG ACCGTTGGGT 
TTAATCATGT TTCAAACTTA TTAGTATCTC TTTCCATGTA CGCTTTATCA 
TGGAATAAAG TAAAGCTCCT TTTACAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G33070.1 [+] show detail - Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.6e-46
superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.2e-45
superfamily DHS-like NAD/FAD-binding domain 6.3e-38
HMMPanther PYRUVATE DECARBOXYLASE 4.4e-174
HMMPanther THIAMINE PYROPHOSPHATE ENZYMES 4.4e-174
PatternScan TPP-binding enzymes, conserved site 0
HMMPIR Pyruvate decarboxylase/indolepyruvate decarboxylase 4.8e-278
HMMPfam Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain 3.4e-37
HMMPfam Thiamine pyrophosphate enzyme, C-terminal TPP-binding 8.8e-16
HMMPfam Thiamine pyrophosphate enzyme, central domain 3.7e-17
Gene3D no description 9e-61
Gene3D no description 5.1e-46
Gene3D no description 8.7e-52

See the detailed result >

AT4G33070.1

Model type
Protein coding
Short Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Computational Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G01320.1); Has 20589 Blast hits to 20526 proteins in 2548 species: Archae - 428; Bacteria - 13367; Metazoa - 177; Fungi - 761; Plants - 551; Viruses - 4; Other Eukaryotes - 5301 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-E17 introduced

  • F11139 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found