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  3. RAFL09-23-M12

RAFL09-23-M12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08054)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-M12 - full reading 
AACTTTCAAG ATTCAACAAA ACCCACTTTC TATAGTTTTA TATGTTCATT 
TTTTTCTGCT AAAGTATTTT TATATGTTCA TATTTCTCTT TTGTGCCATC 
TTTTTAATAA TTTAATCTTC CTACAGAAGA TAATCTCCAA CAAAAGTTTT 
TTCTTACAAG AAAGATTCCG AGAAGTCTTT TGTGTTTTCA ACAAACTCCA 
GGGTTTTTTC AATGAACATG AGCAATAAAC GTAATCAGCA ACCTTCGTAT 
ATTGCTGATC ATTTCAGCAG TTTGGATCAG GTGATAACTT CTCTGAGAGA 
AGCTGGACTT GAATCTTCAA ATCTGATTCT AGGAATTGAC TTTACCAAGA 
GCAATGAGTG GACAGGGAGA TATTCATTCA ATAGAAAAAG CCTTCATGCC 
ATTGGTAAAA GACAGAATCC ATATGAGAAA GCAATATCGA TTATTGGTCG 
TACTTTGTCT CCCTTTGATG AAGATGATCT TATACCTTGT TTCGGTTTTG 
GCGATGTAAC AACGCGAGAT CAATATGTAT TCAGCTTTTA TCCCGAGAAC 
AAAAGCTGCG ACGGATTGGA AAACGCAGTT AAAAGATATA GAGAGATTGT 
CCCACATTTG AAGTTGTCCG GTCCTACCTC GTTTGCACCG GTTATTGATG 
CTGCCATCAA CATAGTTGAG CAGAACAATA TGCAATACCA TGTTCTCGTC 
ATTATCGCAG ATGGTCAGGT CACAAGAAAT CCAGATGTGC CGCTTGGTCG 
ACTTAGTCCA CAGGAAGAAG CTACTATGAA CTCGATAATG GCAGCGAGCC 
ATTACCCATT GTCGATAGTC TTGGTTGGAG TAGGAGATGG ACCATGGGAC 
ACAATGAAAC AATTCGATGA CAATATTCCT CACCGTGAAT TCGATAACTT 
CCAGTTTGTA AACTTCACGA AGATAATGTC AGAGCACAAA GATGCGGCTA 
AGAAGGAGGC TGCTTTCGCA CTCGCAGCTC TCATGGAGAT CCCTTTTCAA 
TACAAGGCTA CATTAAGTCT CAATAGAAAA CCAGTGCGCA GTTCCCATCA 
GCACCACAAG CCACTCCCGC CACCACCAGA GGTTATAGAG CGTGACAATG 
CTGTTAGATC GGTGCCAAAT CAGATGACAG AAACTGCAGA GAAAAGTGAC 
AGACTCGCTC CTTCCACAGT GCCGGTATGC CCGATTTGCT TGACGAATCC 
AAAGGACATG GCTTTTAGCT GCGGTCACAC GACATGCAAG GAATGCGGAG 
TTGTTATCAC AACATGCCCA CTATGCAGAC AACCAATAAC AACAAGGATA 
AGGCTGTACA CTTGACTCGG AAAAATTCTT AGAGATGAGA CAAATTATAT 
GGTTAAGCAC TTGAGCTTCA TGTTTATACT TCTGTAGAAC ATTGTACAGT 
CCAAGCAGAA GAATTGTAAA GCATAAATCT CGAGTTGTAG TTCATATGGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G63970.1 [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther COPINE 2.6e-142
HMMPfam Copine 2.4e-52
superfamily RING/U-box 8.8e-10
superfamily vWA-like 1.9e-08
ProfileScan Zinc finger, RING-type 11.383
HMMSmart von Willebrand factor, type A 2.7e-05

See the detailed result >

AT5G63970.1

Model type
Protein coding
Short Description
Copine (Calcium-dependent phospholipid-binding protein) family
Computational Description
Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-M12 introduced

  • F00231 - Specific phenotypes were NOT observed.
  • F24849 - Specific phenotypes were NOT observed.
  • F29049 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found