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  3. RAFL09-23-M17

RAFL09-23-M17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08055)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-M17 - full reading 
GAACAATTCA TTCTTCTGGG TGTGTTGTGT TTGAGTTTTT GGATCATACG 
AAGAAGAAAT CGGCGGGAGA AGCTATGTCG AGGCTATGGG CGAGATTTGC 
GGGATTGTTC AGTAGCAAGA GTTTTATCGG AGTAGACAAG ACTGGTAACA 
AGTACTTTTC CAGAATGGAG GAGATTGACG GATTCGTGAA GGAGAAAAGA 
TGGGTCAAGT TTAGACGAGA GGAGGACCCA ACCTCTATTC CTGTTGAATG 
GATTTGTTGG CTGAATGGGC AGCGAAAAAG GGCTCCTACT CCTGAGGAAA 
TGATTGAACT TGAAGCAAGG CGTGAGCGTG TAAAGCTTAA TGTTGCTCTT 
CTCAAGAAGG AAGAGGAGGA GAAGAAAGCC AGAGTAGGCA CCGGACGCAA 
AATCACCATT GGTAAAGTTG ATGGTCCAGA TTTGACAAGC TTTGTTCGCC 
AATTTCCACC AGATTCAAAA GGTGGTGAAC CAGAGGAAGC TAGTGAAGAA 
GCAGATAAAT CAAGGGCCAA GGAACATGAA CCCGAGATAG TTTCTGCAGA 
ACCACCCGAA CCAAAGACAA CAGAGCCATC AGGATCTGGA TCATCATTTA 
GGCCCGGGAC ATGGCAGCCA CCATCCTAAA CACATCTCTC TTCACGCAGA 
TGACAAACCA ACATACTATT CAATTATTTT GTTTGTTGTA CTCTACACAA 
CCGATTGGTT TGAGCCTTAC AGATGAGCCA TAAGACCAGA GAGCTTTTCA 
AGACCCTAAA ATTGTGTCCT TTCACGCTGT CATTGAGGAC TTAGAAGAGT 
CAAAATGAGA AGCCATCTTC TTATACTTTG TTTTGTTTAG GGTGTTTGTC 
TCTTGGCATA ATGCTTGAGA CTTTTAGCCT GCCTTGTCCT TCATAGCTGA 
AGAGGAGCCT AGCTACCTTT TGTTTCTCTT CGTTGACTTG AATAAAACAG 
TTTGATTGAA TAACAGTTAT TCATTTTCAT GTCATAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT4G26965.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 0.00027
Coil coiled-coil 0
HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 0.00000000000029

See the detailed result >

AT4G26965.1

Model type
Protein coding
Short Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Computational Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 317 Blast hits to 317 proteins in 96 species: Archae - 0; Bacteria - 24; Metazoa - 85; Fungi - 52; Plants - 37; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-M17 introduced

  • F19951 - seed::decreased size / seed::decreased length

Mutant lines with disrupted or induced

5 mutant lines found