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  3. RAFL09-23-N04

RAFL09-23-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08057)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-N04 - full reading 
GTTCTTCCTT CTGATGAAGG TTTTAGCTGG GCTGATGAGA ATTATAGCTC 
ACTTCAACGC AGTATTGATG TTTGGTCATT TGTTATTTCC CTGAGGATTC 
GTATCTTGTT CGATAATTCG AAATGGGCTT ATGTTGGAGG ATTCACAGAA 
GAAAAACAGA AAAGCAGAAG AAGAGAAACA GCTTCATGGT TGAGAGAGAG 
TGTATTGCAG CTTGGTCCAA CGTTTATCAA ACTGGGACAG TTGTCTTCAA 
CTAGGTCAGA CTTGTTTCCG CGCGAATTCG TGGATGAGCT TTCCAAGTTG 
CAGGACAGAG TCCCCGCTTT TTCTCCAGAG AAAGCAAAGC GCTTCATTGA 
GGCTGAACTT GGGGCTCCTA TTAGTGTAAT GTATAAAGAA TTTGAAGAGC 
AACCCATAGC TGCAGCTAGC CTTGGTCAGG TACACAGAGC TGTTTTGCAC 
AATGGCGAGA AAGTGGTAGT AAAAGTACAA AGACCCGGAC TAAAGAAACT 
TTTCGATATT GATCTACGAA ATCTGAAGCT GATTGCCGAG TATTTCCAGA 
AAAGTGAATC ATTTGGTACA AACGATTGGG TTGGTATCTA TGAAGAATGT 
GCCTTAATTT TGTATCAAGA GATTGACTAC ATAAACGAAG CTAAGAACGC 
TGACAGATTC CGGAGAGACT TCCGGAATAT AAACTGGGTC CGCGTACCTT 
TGGTTTATTG GGATTACTCT GCCATGAAGG TCTTGACTTT GGAGTATGTA 
CCAGGTGTTA AGATCAACAA CTTGGACGCC TTAGCTGCAC GGGGTTTTAA 
CCGTTCTAGA ATCGCATCAC GGGCCATTGA AGCTTATCTT ATACAGATAC 
TCAAAACCGG CTTCTTTCAT GCGGATCCGC ACCCAGGAAA CCTTGCAATT 
GATGTAGATG AATCAATCAT CTACTATGAC TTCGGCATGA TGGGAGAGAT 
CAAAACATTT ACTCGGAAGA GATTACTTGA TCTCTTCTAT TCTGTTTATG 
AAAAAGATGC AAAAAAGGTC ATGCAAAACC TTATAGACCT TGAAGCACTT 
CAACCCACTG GAGATCTTTC ATCGGTAAGG AGATCTGTTC AGTTTTTCTT 
GGACAACCTA TTAAGCCAAT CACCAGATCA GCAACAGACT TTGGCAGCTA 
TTGGAGAGGA TCTGTTTGCA ATTTCCCAGG ATCAGCCATT CCGTTTCCCA 
TCAACTTTCA CCTTTGTCAT CCGAGCATTT TCCACACTTG AGGGTATTGG 
TTACATCCTT GATCCAGAAT TTTCCTTTGT GAAGGTTGCG GCTCCTTATG 
CGCAGGAACT CCTGGATCTA AAACAAAGGC AACGCTCGGG AACTCAGCTT 
GTCCAAGAAA TAAGAAAGCA GGCTGATGAT GCCAGGTCTT CTACTCTGTC 
TATGCCATAT CGAGTGCAGC GAATAGAAGA GTTTGTGAAA GAACTCGATT 
CAGGCGATCT GAAACTCCGT GTTCGGGTTC TTGAGTCGGA AAGAGCAGCC 
CGGAAAGCGA CAATACTGCA GATGGCGACG ATGTATACAG TTCTTGGAGG 
AACTCTACTT AATATTGGGG TTACATTTAG CAACCAAGGA AGTCAGCTTG 
TTGCCAATGG ATCCTTCATT GGAGCAGGGA TATTCATGTT ATTGGTACTG 
AGGTCTATGC AAAGGGTAAA TAAGCTTGAT AAATTTGAGA AGATGATATG 
ATGATGACTG GTGGTCTGGT GGATAGTTTA TTCTTTTAAA GCTCCAAATA 
TCAGATATAG AATTTGTGAT GTATAGGTAT AGCATGTATC TTTAGCTCCC 
ATACACAATA TTTATAAATT GTATAAAAAC TGTTTCTAAG GAAAGGAAAG 
TCAAAGATAT AATATGAGAC TGAGTTTCAC TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G07700.2 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR10566 0
HMMPanther PTHR10566:SF7 0
superfamily Protein kinase-like domain 6.8e-16
HMMPfam ABC-1 2.70000000000002e-37

See the detailed result >

AT3G07700.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 10121 Blast hits to 10057 proteins in 1795 species: Archae - 124; Bacteria - 4381; Metazoa - 447; Fungi - 487; Plants - 723; Viruses - 14; Other Eukaryotes - 3945 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-N04 introduced

  • F13405 - seed::increased size / seed::increased length
  • F15014 - seed::increased length
  • F30336 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found