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  3. RAFL09-23-O19

RAFL09-23-O19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13462)

full reading [+] show sequence

Nucleotide sequence: RAFL09-23-O19 - full reading 
TGGCTCCCAA ATGTTATCGT CCTCCGGAAG CTCCCTCTTA TGGCGGAGCC 
GTACACATGT GCCTGCACCG CCGCCTCGGT CTTCGCCACC GCTTAAAGCT 
CTCTCCTTTC CCTTCTCTTC CAGTTTATGG TTTATTCACA GAACCACAAT 
TTCTCCTCTT TCGTGTTCAG CTGAAAGTTC CTCGGAGATT GCCCTGGCGC 
AGAGCCAGCC TGCCCCTGAT TTCAATCCCT GGTCGGAGTT CGCTCAAAAT 
GTGTCTGGCG AATGGGACGG TTTCGGAGCA GATTTTACAT GCGAAGGGCA 
ACCGCTAGAA CTACCTGAAT CAGTGGTTCC AGAAGCCTTT AGAGAATGGG 
AAGTGAAGGT GTTCGATTGG CAGACGCAGT GTCCCACTCT TGCCCAGCCC 
AACTCACTAT CCTTTCTTTA CAAGTCCATC AAACTCCTCC CCACCGTTGG 
ATGTGAAGCT GATGCAGCCA CCCGTTACAG CATCGACCAG AGGATCATCG 
GGGGAGGCAA ATCCTCTGCA TTAGCCTTTT CGTATTCTGT CACTGGCTCC 
TATGTCGCTG TGTGGCCTTT GCGGAACAAC CAGCTTGAGG TGGAGCATTG 
TCTGATCAAT CCAAAGGACA AGGAGTCTCG TGTGAGGATT TTCCAGGTTG 
TCAGCTTAGC AGAGACCACC AACATGTCCT TGCAGAGTGT CAAAGTTTTC 
TGTGAGCAGT GGTACGGTCC GTTCAGAGAT GGCGATCAGC TTGGAGGCTG 
TGCCATCCGT AGCTCCGGCT TTGCTGCTAC ACCTACCACT GCAGCTTCAG 
TGGTTACCGG TTCTTGGAGA GTTCTACTTG CTACCACTAG CTTTCACGCC 
TCTGATTTCG GTTGTATACA ACAAGCTACT GGCGAGAAGG TGATTGAGAT 
TGTGAGAGAA GAAAATGATC TTTTATTGCT TCCGCAAGAG CTGTGGTGCT 
CACTCCAACA AGGCAAAGAC CGCGAAAGAG TATTTTCAGT AGGATGGGTC 
TTTGAGCCAG GCCATGCTAT CACATCCAGC TGCGTCTTCT CTAGCGATTC 
TAAGCTAAAG GAGGTAACAA TGGGGAGAGA GACTGCTCTA TCAGATGTAT 
GATCAATAAT CGTTTAAATC TCCACAGATC ATTCTTATAA TTTTCTTTGT 
AGGATGTGTG CACATAAGTC AAATTACAAT AATCTCATAT GACTTCCTAT 
ACTGATGTTT GATTCAGTTT ATCTGTTAAT AATACATATC AGTTCGTTTT 
AGTAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT4G38225.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPanther PROTEASE-RELATED 2.3e-288
HMMPanther PEPTIDASE M20 FAMILY MEMBER 2.3e-288

See the detailed result >

AT4G38225.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-23-O19 introduced

  • F28740 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found