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  3. RAFL09-24-B02

RAFL09-24-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08060)

full reading [+] show sequence

Nucleotide sequence: RAFL09-24-B02 - full reading 
AACAAGTCAC ACACTTAAAA CAAAACAAAA CAAAACAAAA ACAGAGCACA 
CAAAAAGAGA AACCAAGTTT TCTTAAAAAT GGAGCTAGAA TCTTCTCCTC 
CTCTACCTCC TCATGTGATG CTCGTATCTT TTCCAGGGCA AGGCCACGTT 
AATCCACTTC TTCGTCTTGG TAAGCTCTTA GCTTCAAAGG GTTTGCTCAT 
AACCTTCGTC ACCACTGAGT CATGGGGCAA AAAGATGCGA ATCTCCAACA 
AAATCCAAGA CCGTGTCCTC AAACCGGTTG GTAAAGGCTA TCTCCGGTAT 
GATTTCTTCG ACGACGGGCT TCCTGAAGAC GACGAAGCTA GCAGAACCAA 
CTTAACCATC CTCCGACCAC ATCTAGAGCT GGTCGGCAAA AGAGAGATCA 
AGAACCTTGT GAAACGTTAC AAGGAAGTAA CGAAACAGCC CGTGACATGT 
CTTATCAACA ACCCTTTCGT CTCTTGGGTC TGTGACGTGG CAGAAGATCT 
TCAAATCCCT TGTGCTGTTC TTTGGGTTCA ATCTTGTGCC TGCTTAGCTG 
CTTATTACTA TTACCACCAC AACCTAGTTG GCTTCCCGAC CAAAACAGAA 
CCCGAGATCG ATGTCCAAAT CTCTGGCATG CCTCTCTTGA AACATGACGA 
GATCCCTTCT TTCATTCACC CTTCAAGTCC TCACTCCGCT TTGCGAGAAG 
TGATCATAGA TCAGATTAAA CGGCTTCACA AGACTTTCTC CATTTTCATC 
GACACTTTCA ACTCATTGGA GAAAGACATC ATTGACCACA TGTCGACGCT 
CTCTCTCCCC GGTGTTATCA GACCGCTAGG ACCACTCTAC AAAATGGCTA 
AAACCGTAGC TTATGATGTC GTTAAAGTAA ACATCTCTGA GCCAACGGAT 
CCTTGCATGG AGTGGTTAGA CTCGCAGCCA GTTTCCTCCG TTGTTTACAT 
CTCATTCGGG ACCGTTGCTT ACTTGAAACA AGAACAAATA GACGAGATCG 
CTTACGGTGT GTTAAACGCC GACGTTACGT TCTTGTGGGT GATTAGACAA 
CAAGAGTTAG GTTTCAACAA AGAGAAACAT GTTTTGCCGG AAGAAGTTAA 
AGGGAAAGGG AAGATCGTTG AATGGTGTTC ACAAGAGAAA GTATTATCTC 
ATCCTTCAGT GGCATGTTTC GTGACTCACT GTGGATGGAA CTCAACGATG 
GAAGCTGTGT CTTCCGGAGT CCCGACGGTT TGTTTTCCTC AATGGGGAGA 
TCAAGTCACG GACGCCGTTT ACATGATCGA TGTTTGGAAG ACGGGGGTGA 
GGCTAAGCCG TGGAGAGGCG GAGGAGAGGT TAGTGCCGAG GGAGGAAGTT 
GCGGAGAGGT TGAGAGAGGT TACTAAAGGA GAGAAAGCGA TCGAGTTGAA 
AAAGAATGCT TTGAAGTGGA AGGAAGAGGC GGAGGCGGCG GTTGCTCGCG 
GTGGTTCGTC GGATAGGAAT CTTGAAAAGT TTGTGGAGAA GTTGGGTGCC 
AAACCTGTGG GGAAAGTACA AAACGGGAGT CATAATCATG TCTTGGCTGG 
ATCAATCAAA AGCTTTTAAA AAGTCATTTA AGTTTTTTTG TTTTTTGCCT 
TTGGTTTCTG CAAATTCGTA ATTGTGTTTG TATCCATCCT CCCATTGTGT 
TCTTTGTTTT TCTGTTTACT ATTTTTTTTT GGTATGGGTC TAGGGGAGAG 
TCAATGACCT TACTGAAGAA TGTCAGTCAC GCATTAAAAA ATATATTATT 
AATGGTTAAT ACTATATCTT GCAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT3G21560.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMPanther UDP-GLUCOSYLTRANSFERASE 1.7e-127
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.7e-127
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.9e-51
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.1e-25
Gene3D no description 3.7e-17

See the detailed result >

AT3G21560.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).
Computational Description
UGT84A2; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT4G15490.1); Has 7875 Blast hits to 7793 proteins in 474 species: Archae - 0; Bacteria - 315; Metazoa - 2199; Fungi - 84; Plants - 5106; Viruses - 112; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-24-B02 introduced

  • F06418 - Specific phenotypes were NOT observed.
  • F07347 - Specific phenotypes were NOT observed.
  • F21127 - Specific phenotypes were NOT observed.
  • F26418 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found