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RAFL09-24-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08063)

full reading [+] show sequence

Nucleotide sequence: RAFL09-24-C12 - full reading 
GTCTCTTCTA TATAAAAATA ATCTCGATTT TTCAACTCCG ATCAAAGGTT 
TTGCTAATTC GTCGCCTTAA TTTCGTTCAA GCTTCTACAA AAGTCCCAGA 
TTTGTTCACC TTTTTCGGTA TTGAATCATG ATGAATTCAA TCTTCGGAAA 
GCGAAAAACT CCCGCAGAAC TTCTGCGGGA GAACAAGCGG ATGCTGGATA 
AGTCTATCAG AGAGATAGAG AGGGAGAGAC AAGGCCTACA AACACAAGAA 
AAGAAACTCA TTAACGAGAT TAAAAAGACC GCAAAGCAAG GCCAAATGGG 
AGCTGTTAAA GTGATGGCAA AGGATCTTAT AAGAACGCGG CACCAGATTG 
AGAAGTTTTA CAAGCTTAAA TCTCAACTTC AAGGTGTATC TCTCAGGATC 
CAGACTCTGA AATCTACACA AGCGATGGGT GAGGCGATGA AAGGTGTGAC 
TAAAGCAATG GGGCAAATGA ACAGGCAGAT GAACCTTCCA TCTCTGCAGA 
AAATCATGCA AGAATTTGAG AGGCAGAACG AGAAAATGGA GATGGTGTCT 
GAGGTTATGG GAGATGCTAT TGATGATGCT TTGGAAGGAG ATGAGGAAGA 
AGAAGAGACT GAAGATCTTG TTAGCCAAGT CCTTGACGAG ATCGGTATCG 
ACATCAACCA AGAGCTGGTG AATGCTCCAT CTGGTGCGGT CGCAGTACCC 
GCAGCAAAGA ACAAGGTGGT ACAAGCTGAG GCGACCGGAG CTGAGGACAG 
TGGAGGTATA GATAGTGACC TTCAAGCAAG GTTGGATAAC CTTAGAAAAA 
TGTGAAGCCT TTCCTGTTTC TGTATCATAA TATTACTGAG GCTGATCACT 
TTTCAATTTC AAAGGCAAAT GTTGCAAACG ATGTGTTAAC GTTTTGGGGG 
TGGGTTTGTA ATAAATTCAT AATTTGAGCC CTATATTATA AAACTGATTA 
TTGTTCAAAC ACTTTGTATA TAAACCAATT TAAGGGTCTG AGAGATTTGA 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT2G06530.1 [+] show detail - SNF7 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther SNF7-LIKE PROTEIN (BC-2) (PUTATIVE BREAST ADE 5.8e-152
HMMPanther SNF7-RELATED 5.8e-152
HMMPfam Snf7 4.3e-47

See the detailed result >

AT2G06530.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-24-C12 introduced

  • F11714 - seed::increased size / seed::increased length
  • F21503 - Specific phenotypes were NOT observed.
  • F22314 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found