1. Home
  2. Full-length cDNAs
  3. RAFL09-24-E12

RAFL09-24-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08064)

full reading [+] show sequence

Nucleotide sequence: RAFL09-24-E12 - full reading 
AGGCGTTTAA GCCATAGATA ACAAACCAAA CTAAAAAAAA AAAGTTTCTC 
CTTTTATCAT TCCTTCTCTT CCCTTGTATA GGTGTGATCC TCTTCAAGGG 
GATTTCTCTG GCGGGTCATA CATTCGCACC GATCAAAGTC GGATTGGTCT 
TTCTTAACGC AATCTTGACC CGATTCAAAA AATTTCTGGG TTTGTTAGTG 
AATAGATAAG AAGATAAATG GGAGCTCCGT TAGTGTGCCA CGGGCATTCT 
CGTCCCGTCG TCGATGTGGC TTATAGTCCG GTGACTCCAG ATGGGTTCTT 
TCTCATTAGC GCCAGCAAAG ATTCGAATCC GATGTTGAGG AATGGAGAGA 
CTGGTGACTG GATTGGGACT TTTGAAGGAC ATAAGGGAGC AGTTTGGAGT 
TGCAGCCTTG ATAAAAATGC TATTCGTGCT GCCTCAGCTT CTGCTGATTT 
CACTGCGAAA ATATGGAATG CATTGACAGG AGATGAATTG CACTCCTTTG 
AACACAAGCA CATTGTTCGT GCATGTGCCT TTTCTGAGGA CACTCACCGT 
TTACTCACTG GTGGAATGGA GAAAATACTT CGGATATTCG ATTTGAATCG 
GCCAGACGCA CCTCCAAAAG AAGTCGGGAA TTCCCCTGGT TCAATTAGAA 
CTGTCGAATA GCTTCATAGT GATAATACAA TCTTAAGCTC TTGCACAGAT 
ACCGGTGACA TTAGGTTATG GGACATAAGA AGTGACAAGA TTGTTCATAC 
ATTAGAAACA AAGTCCCCAG TTACTAGTGC TGAAGTAAGT CAGGATGGGC 
GATACATCAC TACTGCTGAT GGATCTAGTG TTAAGTTTTG GGACGCTAAA 
AATTTTGGAT TGCTGAAGAG CTATGACATG CCTTGCAATG TTGAATCGGC 
ATCGTTGGAA CCGAAACACG GTAACACTTT CATTGCTGGA GGAGAAGATA 
TGTGGGTGCA CAGGTTTGAT TTCCAGACTG GAGAAGAGAT TGGGTGTAAC 
AAGGGTCATC ACGGGCCAGT GCACTGCGTG AGGTATGCGC CAGGAGGGGA 
GTCATACACC TCAGGCTCAG AAGACGGAAC GGTCAGAATA TGGGTGGTGG 
GTTCGGTAAA CCATCCTGAG GAGAGCAATC TAAGCGGCCA CGTGAAGCTT 
GTGGCAGAGG AGGTTGTGCG TAAAGCTGAA AGTCTCCGTA TCAGTGAGAA 
AGCCGCAGAA GCTAAATGAA ACACCATCGT TAGCTTATGA TATCACATAG 
ATTCATAGTT GTTTTTGCAT CATTATAAGA TGTGACAAAG GGGTTTTGCC 
TTTTAAAAGT CTCTCAGACC GAATAAAACG AAATAATCTT CAACTATACT 
TGAGTGAATA GTGAATCTAA TCCAAATTTT GACAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT1G15470.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
ProfileScan WD40 repeat 2 11.21
ProfileScan WD40-repeat-containing domain 14.292
ProfileScan WD40 repeat 2 9.84
ProfileScan WD40 repeat 2 13.349
ProfileScan WD40-repeat-containing domain 18.22
HMMSmart WD40 repeat 60
HMMSmart WD40 repeat 0.000023
HMMSmart WD40 repeat 0.000055
HMMSmart WD40 repeat 0.0033
HMMSmart WD40 repeat 220
HMMSmart WD40 repeat 0.000018
superfamily WD40 repeat-like-containing domain 4.5e-25
superfamily WD40 repeat-like-containing domain 4.8e-33
Gene3D WD40/YVTN repeat-like-containing domain 3.2e-24
Gene3D WD40/YVTN repeat-like-containing domain 1.6e-28
PatternScan WD40 repeat, conserved site 0
HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 6e-94
HMMPanther WD40 REPEAT PROTEIN 6e-94
HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 3.2e-68
HMMPanther WD40 REPEAT PROTEIN 3.2e-68
HMMPfam WD40 repeat, subgroup 0.005
HMMPfam WD40 repeat, subgroup 0.0000015
HMMPfam WD40 repeat, subgroup 0.00011
HMMPfam WD40 repeat, subgroup 0.02
HMMPfam WD40 repeat, subgroup 0.00000017

See the detailed result >

AT1G15470.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-24-E12 introduced

  • F27741 - Specific phenotypes were NOT observed.
  • F28030 - rosette leaf::decreased size / cauline leaf::decreased size / stem::decreased thickness / cauline leaf::desaturated green / fruit::decreased length / stem::abnormal / rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / cauline leaf::hyponastic

Mutant lines with disrupted or induced

3 mutant lines found