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  3. RAFL09-24-H23

RAFL09-24-H23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08067)

full reading [+] show sequence

Nucleotide sequence: RAFL09-24-H23 - full reading 
ACTGCATTAA AAAAACACTG ACGTGTAAAT TTTATTTATC CCAATACCGT 
TTACCTTTAG TCAACGATTT TTTTCCCACC AAAGTCCCCA AATACACTCG 
TTTGCGTTTA AACCTTTCAC TTGAAACTCT GTTTTAGACT CTTTTATTTG 
TTAGACTTTT TTGTTTGTTT CGTCGTTGTT GTTTTTTGAC CAAACCACCA 
TGCGATTCGT CGCGCCACCG CCTCGTTCCG GCGATAACTC ACCGTCACCT 
TCACCATCTT CCGGTATATC CGAAGAGATT CTCTCCCGTT CTTCGGATCC 
TCCTTTAGAG TTTAGTCCTC CATTGATCGC CATGGTGGTG GTTCTAGCCG 
CCGCTTTTCT ATTCGTAACT TACTCTCGTC TCATCTCCCG CCGTTTTCTT 
TCACCTCTAT TCCGTCGTTT TAGAAGGTGG CGATGCCGTC GACGCCGTCT 
CCTTCACTTA TCTTCAGCTT CCTCTGCTTC AACTTCATCC TCCGATCTCC 
GATCATTTTC ACCTTTCCCT TTCGACTCTT TTCATTACTC TTCTTACTCA 
CCTTACGGAT TAGACGATTC CGTTATCAAA ACTTTACCGC TGTTTCTCTA 
CTCCGCCGCT GCTTGCACCG GAAAACCCGC GGTGGGGAAA ACCTCCGCCG 
CCAATTGCAG AGATTGTGCT GTTTGTTTGT TGGAATTCGA AGAAGGTGAT 
TATGTACGAA CACTTCCGTT ATGCTTCCAT GCTTTTCACC TTGAATGCAT 
CGATGAATGG CTCCGATCTC ACCCTAACTG TCCGTTATGC CGTACGGCGA 
TTCTCGGATC CGCCGGAGTT TTAACGCCTA TGTCGCCGTT CGTTCCGTTA 
ATGGCTCCTC GAATTCGTCC GAGTCTCGAT GATGAAGAGA ATAACGCGAT 
CATCATCCGC GGCGAAATCA CACCGTCGCG GAGCAATTGG AACACAATCG 
CTGCCGATAC GACGAACGAT CAGGAGATCA GAGCGTCGGT GGAAGAGCAA 
TCATCACCGG CGATTTCTCG GTTCCGGGAG CTGAAGAGAT CGTACTCGTT 
CGAATGCGAG AGAGAATCTG AATCAGAGAG AGTAACGATG GAGCCAGCGA 
CGGTGTCTCC ATGGAGATAC CGGAGATCTA CATGGAACAA ACGTCAATCA 
CCGTTCGGAA ACCTAATATC GAAATCAAGA GTGTTCTCGT TCCGTTACTA 
CAGAAGCACG AAATCACCGT TCTTCCGACG GAGATCATCG GCGGGAGTGT 
TTTACCCGAT ATCAGAACGG ATTCCAGCGA CGGGAAGCTC ATCGCGGCGA 
ACGAAATCGA TGACGAGTCC GATGTTCTTC AGAACAGCAC CGCACTCATC 
GAGCCGGTTA AGATGCGGAG ATCCAGAGGC ACTGTTATCG CCGGAGAGAT 
GGAGAAGAAG AGACACGTGT AGGGCAGAGA TGTAAGATGA AATTTGGACG 
GTGGTGATGA TAAAAAGAAA TATTGAAGTG GAAGGAGAGC A

Gene models with high sequence identity

  1. AT3G18930.2 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 5.5e-15
ProfileScan Zinc finger, RING-type 12.179
HMMSmart Zinc finger, RING-type 5.3e-06
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-16
HMMPfam Zinc finger, C3HC4 RING-type 2e-06
Gene3D no description 5.7e-14

See the detailed result >

AT3G18930.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-24-H23 introduced

  • F01621 - Specific phenotypes were NOT observed.
  • F02536 - seed::increased size / seed::increased length
  • F05519 - Specific phenotypes were NOT observed.
  • F27736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found