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  3. RAFL09-24-I02

RAFL09-24-I02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05756)

full reading [+] show sequence

Nucleotide sequence: RAFL09-24-I02 - full reading 
ATTCGTGTCG GAACTTTAGA TCCGATATTT ATAGAAAGCA ACCAAACTCC 
GGCTCCGGTT ACTCGGGAGT TCAAGTTTTG GATTTTGATG GGTCATGCTC 
GAACTCGTAC CGGTATCATC TCCGTCGCTT TTAAATTCTT CAGGTCTCTG 
TTCCCTCGCC ATCACCGTAC TAACAGCATG AAGATAAAAA CAGGAACGTT 
TTTGGGGGTT TCGATATCAT TGATTCTTAT AAACTTAGCT GCGATCATGG 
AACGTGCAGA CGAGAATCTA TTGCCTTCGG TTTATAAAGA AGTGAGTGAA 
GCATTTAACG CAGGACCATC AGATTTAGGC TACTTAACAT TCGTTAGAAA 
CTTTGTTCAA GGACTTGCAT CACCATTAGC AGGAGTTCTT GTCATTACCT 
ATGATCGTCC CATTGTTCTT GCAATAGGTA CTTTCTGTTG GGCTTTATCA 
ACTGCTGCAG TTGGAGCCAG CAGCTACTTC ATTCAGGTTG CTTTATGGAG 
AGCAGTGAAT GGTTTTGGAT TGGCAATTGT TATACCCGCG CTTCAATCGT 
TTATTGCAGA TAGTTATAAG GATGGTGCGA GAGGAGCTGG TTTCGGAATG 
TTGAACCTCA TTGGTACAAT CGGTGGTATA GGAGGAGGTG TTGTAGCAAC 
TGTTATGGCT GGTTCAGAGT TTTGGGGCAT ACCGGGATGG CGTTGTGCTT 
TTATAATGAT GGCAGCGCTC AGCGCAGTGA TCGGATTACT TGTCTTTCTC 
TTCGTTGTTG ACCCGAGAAA GAACATTGAA CGAGAGGAAC TAATGGCTCA 
TAAGATGAAT TCGAACTCGG TTTGGAATGA TTCATTAGCA GCTGCAAAAT 
CTGTCGTCAA AGTAAGTACC TTTCAGATAA TCGTCGCGCA AGGAATCATT 
GGTTCGTTTC CGTGGACCGC GATGGTTTTC TTTACAATGT GGTTTGAGCT 
TATTGGCTTC GATCATAACC AGACTGCAGC TTTGCTTGGG GTATTTGCTA 
CAGGAGGAGC GATAGGAACA TTAATGGGAG GGATAATAGC GGATAAAATG 
TCGCGGATAT ATCCGAATTC GGGTAGAGTG ATGTGTGCGC AGTTCAGTGC 
ATTCATGGGA ATCCCATTCT CTATTATTCT TCTGAAAGTA ATCCCACAAA 
GCACAAGCAG CTACTCAATC TTCTCGATAA CTCTCTTCCT GATGGGTCTT 
ACCATAACTT GGTGCGGATC AGCGGTCAAT GCACCAATGT TTGCAGAAGT 
CGTTCCTCCA AGGCACCGTA CAATGATCTA CGCGTTTGAC CGTGCTTTCG 
AAGGGTCATT CTCATCTTTT GCTGCGCCTT TGGTTGGAAT TTTGTCAGAG 
AAACTGTTTG GGTATGACTC AAGAGGTATT GATCCTTTGA AAGGTTCCTC 
TGTTCGTGAG GCTGATGCCC TTTCAAAGGG GCTTCTGTCA ATGATGGCTG 
TTCCGTTTGG GCTCTGTTGT CTCTGTTACA CTCCGTTGCA TTTTGTTTTC 
CAGAAAGATC GAGAAAACGC GAAAATCGCG AGCTCTAAAG AAACTGAAAT 
GATCTGAGAG ACTTGCTCAT GTAGTCATGT TGTGATTCTT TTTATACCAC 
AAACGATTTT AAAACCACTA TGTGAAGAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G36790.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Major facilitator superfamily MFS-1 1.2e-34
ProfileScan MFS 18.502
HMMPanther SPINSTER 4.6e-111
HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 4.6e-111
superfamily Major facilitator superfamily, general substrate transporter 2e-45

See the detailed result >

AT4G36790.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18590.1); Has 13584 Blast hits to 13542 proteins in 1941 species: Archae - 325; Bacteria - 10929; Metazoa - 520; Fungi - 516; Plants - 316; Viruses - 4; Other Eukaryotes - 974 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-24-I02 introduced

  • F21525 - Specific phenotypes were NOT observed.
  • F22130 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found