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  3. RAFL09-26-G02

RAFL09-26-G02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08090)

full reading [+] show sequence

Nucleotide sequence: RAFL09-26-G02 - full reading
AATATAACAG AAAAATAAAT ATCTTGTCTG AATCAGAGAG AGAGCTCTCA 
ACAACCAAAG CTTTGGACTC TCAGGCCAGG AAGACTATGG GATTGGGCGG
CGATCAATCC TTTGTTCCCG TCATGGATTC CGGCCAAGTC CGCCTCAAGG
AGCTCGGCTA CAAGCAAGAG CTCAAGCGCG ATCTCTCGGT CTTCTCCAAT
TTCGCCATCT CCTTCTCCAT CATATCGGTG CTCACTGGTA TCACCACCAC
CTACAACACC GGCTTAAGAT TCGGCGGCAC TGTCACTCTG GTCTACGGAT
GGTTCCTGGC CGGCTCCTTC ACAATGTGCG TTGGGTTATC TATGGCCGAG
ATCTGCTCCT CTTACCCTAC CTCCGGTGGT CTCTACTACT GGAGTGCTAT
GCTCGCTGGC CCTCGTTGGG CTCCTCTTGC CTCTTGGATG ACTGGCTGGT
TCAACATCGT TGGTCAGTGG GCAGTGACGG CCAGCGTTGA CTTCTCTCTG
GCACAGTTGA TTCAGGTGAT CGTCCTTCTC TCCACCGGCG GTAGAAACGG
CGGCGGTTAT AAAGGATCAG ACTTTGTTGT GATTGGTATC CATGGTGGGA
TCCTCTTCAT CCACGCTCTT CTCAACAGCC TCCCCATCTC CGTCTTGTCT
TTCATTGGAC AGCTTGCTGC TCTTTGGAAT CTCCTCGGGG TTTTGGTGCT
CATGATTCTG ATTCCTTTGG TTTCTACGGA AAGAGCAACC ACTAAGTTTG
TCTTTACCAA TTTCAACACT GATAATGGCC TTGGCATCAC CAGCTACGCT
TACATATTCG TTTTGGGACT CCTCATGAGC CAGTACACCA TTACAGGGTA
TGATGCCTCT GCCCACATGA CAGAAGAGAC AGTCGACGCA GACAAGAACG
GGCCCAGAGG AATAATCAGT GCAATTGGTA TATCAATTCT GTTTGGATGG
GGTTATATAT TGGGCATAAG CTATGCCGTC ACAGACATAC CTTCTCTTCT
GAGTGAGACC AACAACTCTG GTGGGTATGC CATTGCTGAG ATCTTCTACT
TAGCTTTCAA GAATAGGTTT GGGAGCGGTA CTGGTGGAAT CGTGTGCTTA
GGCATTGTTG CGGTTGCTGT GTTTTTCTGT GGCATGAGCT CTGTCACCAG
CAATTCCAGG ATGGCGTATG CGTTTTCGAG AGATGGAGCG ATGCCAATGT
CGCCGTTATG GCACAAAGTG AACAGCAGAG AGGTCCCCAT TAATGCGGTT
TGGCTCTCTG CTCTCATATC ATTTTGTATG GCCCTCACCT CACTGGGGAG
CATAGTGGCG TTCCAAGCAA TGGTGTCGAT CGCAACGATT GGACTGTACA
TAGCATACGC AATCCCGATT ATATTGAGAG TGACGCTTGC GCGCAACACC
TTCGTACCTG GACCATTCAG CCTGGGAAAA TACGGAATGG TAGTCGGGTG
GGTGGCAGTC CTGTGGGTTG TAACCATATC AGTCCTCTTC TCCTTACCCG
TGGCATATCC CATAACAGCA GAGACACTCA ACTACACTCC GGTGGCAGTT
GCTGGTTTGG TGGCCATAAC CCTCTCATAT TGGCTTTTCA GTGCCCGCCA
CTGGTTTACG GGTCCCATCT CCAACATTCT TAGCTGAAAC AACGTTTCAG
GGGTTGATTT ATAGTAAAGC CATTGTTAGC TAGCTGATAT TTACCCTTTT
ATACATTCAA CAAGCAACGA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT2G01170.1 [+] show detail - bidirectional amino acid transporter 1
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam Amino acid permease domain 1.5e-25
HMMPanther AMINO ACID PERMEASE-RELATED 5e-212
HMMPanther Amino acid/polyamine transporter I 5e-212
HMMTigr Amino acid permease subfamily 0
HMMPIR Amino acid/polyamine transporter I 2.2e-34

See the detailed result >

AT2G01170.1

Model type
Protein coding
Short Description
bidirectional amino acid transporter 1
Curator Summary
Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
Computational Description
bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 15465 Blast hits to 15422 proteins in 1894 species: Archae - 296; Bacteria - 11987; Metazoa - 438; Fungi - 2169; Plants - 254; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-26-G02 introduced

  • F00438 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

43 mutant lines found