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RAFL09-27-A12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08104)

full reading [+] show sequence

Nucleotide sequence: RAFL09-27-A12 - full reading 
TGATCCAAAG AGAAAACGTA TGAGTTGCTT AAACCATAAA CCTCAAGCTC 
AAAATTTTAT CAACCTTATA AAGTTTCGTT TTCTCGAGAT TTTGAATCTT 
TTCAGCTAAA AAAGATCACA GCTTTTTGCG TTTTCTGGAT GAGTTTGAGA 
TAAGAGAAGA TGAAGATTCA GTGTAACGTT TGTGAGGCGG CGGAAGCGAC 
GGTTCTATGT TGCGCCGACG AGGCTGCTCT TTGTTGGGCT TGCGATGAGA 
AAATTCACGC CGCTAATAAA CTCGCCGGAA AACATCAGAG AGTCCCTCTC 
TCTGCCTCTG CCTCTTCCAT ACCCAAATGT GACATTTGTC AGGAAGCATC 
TGGATTCTTC TTTTGTCTGC AAGATAGAGC TTTGCTATGT AGGAAATGTG 
ATGTTGCAAT CCACACTGTG AATCCTCATG TTTCAGCTCA CCAGAGATTT 
CTTCTCACTG GAATCAAAGT TGGTCTTGAA TCTATAGACA CTGGTCCTTC 
TACTAAATCC TCACCTACCA ATGATGATAA AACCATGGAG ACCAAACCTT 
TTGTTCAATC TATACCTGAG CCTCAAAAGA TGGCCTTCGA TCATCATCAT 
CACCAGCAGC AGCAGGAACA GCAGGAAGGA GTTATACCGG GAACTAAAGT 
CAATGATCAG ACATCGACAA AGCTTCCTCT CGTAAGTAGC GGATCAACTA 
CTGGAAGCAT TCCTCAGTGG CAAATAGAGG AGATTTTCGG GCTAACCGAC 
TTTGATCAGA GCTATGAATA CATGGAGAAT AATGGATCAT CTAAGGCGGA 
TACTAGTAGA CGAGGAGATT CAGACAGTTC TTCGATGATG AGATCTGCAG 
AAGAAGATGG AGAAGATAAC AATAACTGCT TGGGAGGTGA GACATCATGG 
GCGGTTCCAC AGATTCAGTC TCCACCTACA GCGTCTGGTC TAAACTGGCC 
TAAGCATTTT CACCACCACT CTGTGTTTGT TCCGGACATA ACTTCTTCAA 
CTCCTTATAC CGGTTCATCC CCGAATCAAA GGGTTGGGAA ACGGCGGCGA 
CGGTTCTAGC ATTTGTAATT ATCTTTTAGC CGCTTGAGAA AAGAGATTGG 
CAGCTTTCTC AGTAGATGTA AGATCACATA AATGATTTGG AAACTTGTAA 
TGTAGTGATC TGTGAGAGTC GGTGTTCTTT GTTAGCTGAA AAAACAAAAA 
GATGTTTATT TGGTTGAAGA TTATAAGGGG TTAAATTACT AAGTTATCAA 
TTTGG

Gene models with high sequence identity

  1. AT1G78600.1 [+] show detail - light-regulated zinc finger protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, B-box 0.00000000000066
HMMSmart Zinc finger, B-box 0.00000000000038
HMMPfam Zinc finger, B-box 0.000055
HMMPfam Zinc finger, B-box 0.0000082
ProfileScan Zinc finger, B-box 10.537
ProfileScan Zinc finger, B-box 8.759

See the detailed result >

AT1G78600.1

Model type
Protein coding
Short Description
light-regulated zinc finger protein 1
Computational Description
light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1826 Blast hits to 1364 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-27-A12 introduced

  • F26918 - rosette leaf::desaturated green / rosette leaf::abnormal / whole plant::decreased height / stem internode::decreased length / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::dark green / stem::abnormal / whole plant::decreased height / stem internode::decreased length / fruit::abnormal

Mutant lines with disrupted or induced

2 mutant lines found