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RAFL09-27-O19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08142)

full reading [+] show sequence

Nucleotide sequence: RAFL09-27-O19 - full reading 
AAAAAAGCAG AGCTCACACT TAGAAAACAA AAAACAAAAA TGGCTACGCT 
TTCGTTTGGA ATCGCCGCCG CTGCAACCAC CGTCCGTACG ATTCCGAGAT 
TTAATTCACG GAGGAGCAAA ATCACATGCG AATGGGATCC GAAAGGTGTG 
TTGGGTCCGG CTCAAACTGG TCATATAGCT CGGCTTGAGT TTAAGCGTCG 
GCTAGAGAGA GATTCAGAGG CAAGAGAAGC TTTTCAGAAA CAACTTCGTG 
AAGAGAAAGA GCGTCGTCAA GCTCTTAGAC AATCTAGAGT TGTACCGGAT 
ACTGCTGCGG AGCTGATTGA GTACTTTCTT GATACTGAAG CTCAGGAGAT 
TGAGTATGAG ATCGCTAGGC TTAGAGGAAG GTTAAACGAC GAATTCTTTG 
CGCAGATACG ACTTGAAATC GGACAGATTC GATTTGCTGT TACTAAGACT 
GCGGATATTG AAGATAGATT GATTGAGCTT GAAACACTTC AAAAAGCTTT 
AGAAGAAGGA ATAGAGGCTT ATGACAAAAT GCAAAATGAG CTTATGACGG 
CTACAAATAG CTTAACCAAA CTCTTAACCT CAACCGATAT AAAAACCACA 
TTGTTGGATA TGGTGGAGAA AAACCAAATC AACAGATCTT TGTTGGCACT 
TCTCGACGAA AACATAGCCA ATGCATACAA AGGAAACCAG AAAGAAGCAG 
GAGATTACAT GGAGAAGATA CGCTCTTCAG TTCTTAAGTA TTTGACAGTG 
TAGGATCATA TGAGTCTTCG AAAGATTTCT CAAGCTTTTG AATGTTTTCT 
ATTATCGGGG AAAATTGTAT TTATATTTTT GTTTGTTGAG TAAAATGTAT 
TTTCTTTTTT TCCGAACGAT GTTTATATTT TTAGGGTCAT TTCAGATCTT 
CAAGTAATAA AAAGAATTTA AT

Gene models with high sequence identity

  1. AT1G62780.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT1G62780.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-27-O19 introduced

  • F09112 - Specific phenotypes were NOT observed.
  • F12435 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / stem::decreased thickness / cauline leaf::epinastic / cauline leaf::abnormal / fruit::decreased length / stem::abnormal
  • F12626 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found