1. Home
  2. Full-length cDNAs
  3. RAFL09-28-I04

RAFL09-28-I04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09708)

full reading [+] show sequence

Nucleotide sequence: RAFL09-28-I04 - full reading 
AATTTCAACG TCTCGTCCTT CAATTTTCGT TTTCCGAGAA AATTTAGGAA 
AGAAAGAGAA AGAGAGGGCA GAGACAAAAA TTTCTTCGCC GTCTGAGTGG 
GAAAGATGGC GGAGGATTTC GCTAGAGCGG TAGACGATGG GCTTAAACTC 
GCGAAACGGA TTTATTTCGG CAAAGACCGA GCCGTTGCGG CGCCGAGACC 
ACCTGCTCCG ATGGACAGAT CTTCCACTAC GCAGCCTTAC CTTCCTACAG 
CACCTATGGT TTACGCCGTT ATACCCGACC CGGGAATTGT GGATAACCCG 
GATTTGCCTA GCTATCAGCC TCACGTGCAC GGCAGGTGCG ACCCACCGGC 
TTTGATTCCT CTGCAGATGA ATTCGATTGA GCTGGATGTT GATTGTTATC 
TCGACACGGC TCTTGTTACT GTCACCGGAT CGTGGCGGGT TCATTGTGTT 
ATGGGAAGCA AGAGATGTGA TTGCCGAATT GCTATTCCCA TGGGAGAACA 
GGGATCAATA CTAGGTGTTG AGGTTGAGAT TCCTAGAAAA TCGTACACAA 
CGCAGTTGAT CACAGCAGAA GATGGAAACG AATTTGAGAA AACGGCACTA 
CCTGAAACTG GTGGCTTTTT GAAACCTAAC ATTTTCACTC TTACTATACC 
ACAGGTTGAT GGAGGTACCA ATCTCTCTAT CAAGATGACT TGGTCTCAGA 
AGTTGACGTA TAACCAAGGG CAGTTTTTTC TTGATATTCC TTTCAACTTT 
CCTGAGTATG TGACTCCTGC GGTAAAGAAA ATCTCAAAAA GAGAAAAGAT 
TTACTTGAGT GTTAATGCTG GTACTGGAAC AGAAGTTCTC TGCAAAGGAT 
GCAGTCATCA ACTAAAGGAG AAATTGCGGA GTGCAGGGAA GTTGAGGTTT 
GCATATGAAG CAGATGTTTT GAAGTGGTCG AACACTGACT TTAGCTTTTC 
TTATACGGCC TCCTCAAGTA ATATAGTTGG TGGACTTTTC CTTCAATCTG 
CGCCTGTTCA CGATGTTGAT CAGAGGGACA TATTTTCTTT CTATCTTTTT 
CCAGGAAAGC AGCAAAAAAC TAAGGCATTC AAGCGGGAGG TAGTATTTGT 
TGTTGACATA AGTAAAAGTA TGACTGGAAA ACCTCTCGAG GATGTAAAAA 
ATGCGATATC TACAGCTCTA TCTAAGCTTG ATCCTGGAGA TTCTTTCAAT 
ATTATCACTT TCAGCAATGA TACTGCTCTA TTTTCGACAT CAATGGAGTC 
AGTCACTTCT GATGCTGTTG AAAGAGGCAT TGAGTGGATG AACAAGAACT 
TTGTCGTCGC AGATGGTACA AACATGCTCC CTCCCCTAGA GAAGGCTGTG 
GAAATGCTTT CAAATACTCG TGGCTCTATT CCTATGATCT TCTTCGTAAC 
AGATGGGTCT GTTGAAGATG AGAGACACAT TTGTGATGTA ATGAAGAAAC 
ATCTAGCTAG TGCTGGATCA GTGTTTCCTC GGATACACAC TTTTGGGTTA 
GGTGTATTCT GTAATCACTA CTTCCTGCAA ATGCTTGCAA ATATATCCTG 
TGGCCAGCAC GAATCAGTTT ATAATACAGA TCACATTGAG GAAAGAATGG 
ACAAACTGTT TACAAAGGCT TTATCCACCA TTCTTGTTAA TATAGCAATT 
GAGCCCCTTC AGAGTCTAGA TGAAGTTGAG GTATACCCTT CAAATATTCC 
GGATCTGACG TCTGCAAGTC CATTGATGAT ATATGGAAGA TACCGAGGAA 
AGTTCCCCGA GAATGTGATA GCCAAAGGTC TGCTAGGAGA TTTGAGCAGC 
TTTTCGACAG ACTTGACTGT ACAGAGTGCA AAAGACATGC CTCTTGATAA 
AGTATTTGCA AAGAATGTTA TTGACTTGCT TACTGCTGAG GCATGGTTTT 
CTGAAGATAA ACAGCTAAAA GAGAAGATTG CTAAACTAAG CATCCAAACC 
GGCGTACTAT CCGAGTATAC TCGAATGATC CAATTAGAGA ACACAGAAGA 
ATTGAAACCC AGCGAAACTG GCGGAAAGAA AAAGACAACA AGCAACGGCG 
AGAAACAGAA GATGATATCA AGAACGATCC CGCTACAAAG CCTTGGGATA 
GGATTTGGGG ATAAAACAGC CACCAGAGAG AATGTTCCGC CAGGATTTGG 
CGAGCAGAAA GCTCCTGATG CTGCTGAGAA GTTCGTCAAG GCTGCTTCGA 
GCTGTTGTGT CTCCTTGTGC AACAAATGTT GCTGCATGTG TTGTGTCCAA 
TGCTGCTCTA AGCTCAATGA TCAATGTGTC CTTGTCTTCA CACAGCTCTT 
CACAGCGATT GCTTGCATCG CCTGCTTTGA ATGTTGCTCA ACTGTTTGCT 
GTTCTGGAGA CGATGGGTAG TTAGTTAAAT TATAAAAAAA AATCGGTTTT 
GAATTCGAGT GTAAAGCTTT AAAAGTTTCA AAGTAAGTTT GTACATTTTA 
CATACACACT GCATGTAATT TCTGTACGGC CTGATCAAAT ATAAAAGCTG 
TGGGTTTTCT GT

Gene models with high sequence identity

  1. AT1G19110.1 [+] show detail - inter-alpha-trypsin inhibitor heavy chain-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN 4.8e-177
HMMPanther VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINI 4.8e-177
superfamily vWA-like 8.5e-23
HMMSmart von Willebrand factor, type A 0.00000000002
HMMPfam von Willebrand factor, type A 2.1e-19
ProfileScan von Willebrand factor, type A 14.796

See the detailed result >

AT1G19110.1

Model type
Protein coding
Short Description
inter-alpha-trypsin inhibitor heavy chain-related
Computational Description
inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1); Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28; Bacteria - 510; Metazoa - 544; Fungi - 65; Plants - 218; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-28-I04 introduced

  • F00845 - seed::increased size / seed::increased length / seed::decreased width
  • F23431 - Specific phenotypes were NOT observed.
  • F24340 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found