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Full-length cDNAs
RAFL09-30-D21

RAFL09-30-D21

RIKEN Arabidopsis Full-length cDNAs

CTTCTCATTT TTCCATTCTT TAAGTCTTCC CGTTGATTCA TTCCGATCTG 
AAATCTCTCT CTAGATTTCT CTATTTTTCG AATTTTAAAT GAACGATTTG 
TTTTCCAGCT CATTCTCTCG CTTCCGCAGC GGAGAACCAT CCCCTCGCCG 
AGACGTTGCC GGCGGTGGCG ACGGAGTTCA GATGGCGAAT CCCGCGGGAT 
CAACCGGTGG TGTGAACCTC GACAAGTTCT TCGAAGATGT TGAATCTGTG 
AAAGAAGAGC TAAAGGAGCT AGATCGGCTC AACGAAACAC TCTCTTCATG 
TCACGAGCAG AGCAAGACGC TTCACAATGC TAAAGCCGTT AAAGATCTCC 
GGTCTAAAAT GGACGGTGAC GTTGGAGTCG CGTTGAAGAA GGCGAAGATG 
ATTAAAGTTA AACTCGAGGC GCTAGATCGT GCCAATGCTG CTAATCGGAG 
TCTCCCTGGC TGTGGACCTG GTTCTTCCTC CGATCGAACC AGGACCTCTG 
TCCTCAATGG TCTCAGGAAG AAATTGATGG ACTCTATGGA TAGTTTCAAC 
CGATTGAGGG AGCTTATCTC GTCCGAGTAT AGAGAAACTG TACAGAGGAG 
GTACTTCACC GTCACCGGCG AGAATCCGGA TGAACGAACC CTAGATCGAC 
TGATTTCCAC TGGAGAGAGT GAGAGATTCT TGCAGAAAGC AATACAAGAA 
CAAGGAAGAG GAAGGGTGTT AGACACCATT AACGAGATTC AAGAAAGGCA 
TGATGCGGTT AAAGACATTG AGAAGAATCT CAGGGAGCTT CACCAGGTGT 
TTCTAGACAT GGCCGTGCTG GTAGAGCACC AGGGAGCTCA GCTTGATGAC 
ATCGAGAGTC ATGTGGGTCG AGCTAGCTCC TTTATCAGAG GCGGAACTGA 
CCAGCTACAA ACCGCTCGGG TTTACCAGAA GAACACGCGA AAATGGACAT 
GTATTGCCAT TATTATTCTC ATCATCATCA TAACTGTTGT GGTTCTTGCT 
GTTTTAAAAC CGTGGAACAA CAGCAGTGGC GGCGGCGGCG GTGGTGGTGG 
TGGGGGTACC ACTGGAGGAA GTCAACCAAA TTCAGGGACA CCACCAAATC 
CTCCTCAGGC AAGGCGTCTA TTGCGTTGAA GTTGAAGTTG AAGTTGAGTT 
TCGTTATTTG CATATATATT CTTTCTTTGA AAAACCTTAT TATCAAACCA 
GCTTTGTGTT ACTACTTTCT ACTGCTGGTT TGTTGTTAAT CTCCCGTTTA 
TTTGGTTTTT GTGAAAGAAT TTAAAATGTG GGTTAGATGA GAAAATTAGT 
ACAACATTCT CTTGTATCTA TGTTTGCTAT ATGGGTTATA TTTACT

Gene models with high sequence identity

AT3G11820.1 [+] show detail - syntaxin of plants 121
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3.4e-50
HMMPanther	SYNTAXIN, ARABIDOPSIS THALIANA	1.3e-119
HMMPanther	SYNTAXIN	1.3e-119
HMMSmart	Syntaxin, N-terminal	2.9e-46
HMMSmart	Target SNARE coiled-coil domain	1e-19
Coil	coiled-coil	0
PatternScan	Syntaxin/epimorphin, conserved site	0
HMMPfam	Target SNARE coiled-coil domain	4.8e-22
HMMPfam	Syntaxin, N-terminal	0.000000000001
ProfileScan	Target SNARE coiled-coil domain	17.541
superfamily	t-SNARE	5.3e-50

See the detailed result >

AT3G11820.1

Model type: Protein coding
Short Description: syntaxin of plants 121
Curator Summary: Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational Description: syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-30-D21 introduced

F18820 - Specific phenotypes were NOT observed.
F28308 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found