1. Home
  2. Full-length cDNAs
  3. RAFL09-31-D16

RAFL09-31-D16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05835)

full reading [+] show sequence

Nucleotide sequence: RAFL09-31-D16 - full reading 
AGTGCTCGAC TATACATATA GCCAAAGAAG AGCAGAAAAA TCAAAGTCGT 
GAGTTCAGAA GCTATAACAA AATTTCTAAG AAAAAGAAAG ATAAGAAAAT 
GGAGAATTTT ATGGTAGAGA TGGCCAAGAC CATTTCGTGG ATAGTTGTAA 
TAGGAGTGTT AGGTTTAGGG ATTCGTGTTT ACGGTAAAGT GATGGCGGAG 
CAATGGAGGA TGCGGAGGAA GCTGACGATG CAGGGCGTGA AGGGTCCTCC 
GCCGTCGCTA TTTCGTGGAA ACGTGCCGGA GATGCAAAAA ATCCAGTCAC 
AAATAATGAG TAACTCTAAA CACTACTCCG GTGATAATAT CATCGCCCAT 
GACTACACTT CTTCTCTCTT TCCATATCTC GACCACTGGC GAAAACAATA 
CGGGAGAGTG TACACGTATT CGACGGGGGT GAAGCAACAC TTGTACATGA 
ACCACCCGGA GTTGGTGAAA GAACTTAACC AAGCCAACAC TCTTAACCTT 
GGCAAAGTCT CTTACGTCAC CAAACGCCTT AAATCCATTC TTGGCCGTGG 
TGTTATCACC TCTAATGGGC CTCATTGGGC CCATCAACGT CGTATCATTG 
CACCTGAGTT TTTCCTCGAC AAAGTCAAGG GAATGGTGGG ATTGGTGGTG 
GAATCAGCGA TGCCAATGCT GAGTAAATGG GAAGAGATGA TGAAAAGAGA 
AGGAGAAATG GTGTGTGACA TAATTGTAGA CGAAGACCTA AGAGCTGCCT 
CTGCTGACGT TATCTCTAGA GCTTGCTTTG GGAGCTCTTT CTCCAAAGGC 
AAAGAGATCT TCTCTAAGCT TAGATGTCTT CAAAAGGCCA TCACTCACAA 
CAACATCCTC TTCAGCCTCA ATGGCTTCAC TGATGTTGTG TTCGGGACTA 
AGAAGCATGG GAACGGGAAG ATTGATGAGC TAGAGAGACA CATTGAGTCT 
TTGATATGGG AAACCGTTAA AGAAAGAGAA AGGGAATGTG TGGGAGATCA 
CAAGAAGGAT CTAATGCAGT TGATACTAGA AGGGGCCAGG AGTAGTTGTG 
ATGGCAACTT GGAGGACAAG ACACAATCTT ACAAAAGTTT CGTGGTGGAC 
AATTGCAAGA GCATCTATTT TGCCGGGCAT GAGACCAGTG CGGTTGCTGT 
CTCTTGGTGT CTTATGCTCC TCGCTCTCAA CCCTTCTTGG CAAACTCGTA 
TCCGCGATGA AGTCTTTCTT CATTGCAAGA ACGGTATACC TGACGCAGAC 
TCTATTTCCA ACCTCAAAAC GGTGACAATG GTTATCCAGG AAACGTTGAG 
GCTATACCCA CCAGCAGCAT TCGTGTCGAG AGAAGCCCTT GAGGACACAA 
AACTCGGAAA CCTCGTGGTG CCAAAGGGAG TGTGCATCTG GACGTTGATC 
CCTACATTGC ACAGAGACCC TGAGATATGG GGAGCTGACG CAAATGAATT 
CAATCCAGAA AGATTTAGCG AAGGAGTCTC TAAAGCCTGC AAACACCCTC 
AGTCATTCGT CCCATTTGGC TTAGGGACAA GGTTGTGTTT AGGAAAGAAT 
TTTGGTATGA TGGAGCTCAA GGTTCTTGTC TCACTTATTG TGTCAAGGTT 
TAGCTTTACT CTCTCTCCCA CATATCAACA CTCTCCGGTG TTTAGAATGC 
TTGTAGAGCC TCAACATGGT GTTGTCATTA GAGTTCTGAG ACAATAAGAT 
ATGTCGTTAG CTTATGGTTT TAGTTTTAAT CCTGTGTAAT AATAAGATAT 
TATTACACTA TAGTACTATA ATAGTATTTT CTTTGGTACC

Gene models with high sequence identity

  1. AT5G24910.1 [+] show detail - cytochrome P450, family 714, subfamily A, polypeptide 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome P450 6.4e-98
PatternScan Cytochrome P450, conserved site 0
HMMPanther CYTOCHROME P450, SUBFAMILY 72 1.2e-199
HMMPanther Cytochrome P450 1.2e-199
Gene3D Cytochrome P450 1.3e-91
HMMPfam Cytochrome P450 4.8e-78
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, E-class, group I 5e-18
FPrintScan Cytochrome P450, C-terminal 6.8e-14
FPrintScan Cytochrome P450, C-terminal 6.8e-14
FPrintScan Cytochrome P450, C-terminal 6.8e-14
FPrintScan Cytochrome P450, C-terminal 6.8e-14

See the detailed result >

AT5G24910.1

Model type
Protein coding
Short Description
cytochrome P450, family 714, subfamily A, polypeptide 1
Curator Summary
member of CYP714A
Computational Description
"cytochrome P450, family 714, subfamily A, polypeptide 1" (CYP714A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 714, subfamily A, polypeptide 2 (TAIR:AT5G24900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-31-D16 introduced

  • F07014 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::variegated / rosette leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem internode::decreased length / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length / stem internode::decreased length
  • F13311 - Specific phenotypes were NOT observed.
  • F15704 - Specific phenotypes were NOT observed.
  • F20008 - Specific phenotypes were NOT observed.
  • F21812 - rosette leaf::dark green / cauline leaf::present in greater numbers in organism / stem::dark green / cauline leaf::dark green / fruit::decreased length / stem::present in greater numbers in organism
  • F23016 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found