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  3. RAFL09-31-D21

RAFL09-31-D21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05837)

full reading [+] show sequence

Nucleotide sequence: RAFL09-31-D21 - full reading 
TGGTCCGTGT GACCGTGTCT ACGACGTTGA AATCGAAATT ACCACAATGT 
CCTCGCCGGA GCGTGCTCTC TTGAATCTAT TGACGGACAT CGCTCTCTCC 
TTCGACGGCG CAATCCTCGG ACTGACTTTA GCTGTTAGCG CCGTCGGTTC 
TGCTCTCAAG TATGCTTCTA CCAACGCCGC GTTGAAGAAG ATCAAAGATG 
CACCCGAAGT CTCCATTTCC GACCTCCGAT CACTGCTTCC GGCTTCTGAA 
GACAAATCAG AGACTAACGA TAACAGGAAG AGCAATGATC AGCGAATCGT 
TGTGGTTCGC GGAGTCGTCA AACCGAAAAT TTCCGGTGAT GAGGGTTACA 
AGAACAACAA CGTGTTAATC TCTCCGGAGA CTGGAGATAA AGCTCTTATC 
ATTCAGAGAA CGCAAACTTA TGTGTATAGT GGATGGAAGA GATTGTTTCA 
GTCCACTGGT CACCGGTTTA TGTTGGAGAG ATCATTGCGC AAACACGGTG 
CTGATTTTAC GAGAACGGTC CCATTTGTCA TTGTTGGAAA GGATCAGCAA 
TCGAACTCTA GTTTTGTCGC TGTTAACATG GATGGCTCAA GGCAACCTCT 
TCCGCTTACC ACTGTGTATA ATCGCTTGCA GCCTATTAAT TCTTCGTTTC 
TTCAAGCCTT TTTGTACCCC GATTATCCTG TTGGTCTGCT TGATATAGAG 
AAGATTTTAC CACCTGGGAA AGATATAACA GCTGTTGGCA TCTACAGTTT 
TAATAATGGA GTTCCTGAAA TCAAATCGTG CCAAGATCTT CCTTATTTCT 
TATCAGAGAT GACCAAGGAC AAGATGATTG AGGACCTTAT GGAACAGACC 
AACTTTATAT TCTTGGGCAG CGTTATCTTG GGCATTGTGT CTGTTGGCAT 
CCTTAGCTAT GCTGCTGTCA GGACCTGGAA TAAATGGAAA CAATGGAACC 
ATCAGAGAGA ACTGCCACAG AGACCGAACG ATTCTGTGGT CGATGATGAA 
CCCGAAGATG CAGATGAAAT CCCAGATGGA GAATTGTGTG TGATCTGCGT 
GTCAAGAAGG AGAGTACCTG CGTTTATTCC CTGTGGACAT GTAGTATGTT 
GCAGGCGATG TGCTTCAACC GTGGAACGAG AGTTAAACCC TAAGTGTCCA 
GTTTGTCTTC AGAGCATTAG GGGATCTATG CGTGTATATT ACTCTTAGTG 
ACCCTGAATC TTCTCTCATT GTATGTAATA GGGTAATGCA ATTTGTACTC 
TCAGAGAATC GGAAGTTAAC AAAATAGTTT GACG

Gene models with high sequence identity

  1. AT1G54150.1 [+] show detail - E3 Ubiquitin ligase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 5.7e-11
HMMSmart Zinc finger, RING-type 0.0075
HMMPfam E3 Ubiquitin ligase 4.5e-34
HMMPanther UNCHARACTERIZED RING ZINC FINGER-CONTAINING P 2e-134
ProfileScan Zinc finger, RING-type 10.409

See the detailed result >

AT1G54150.1

Model type
Protein coding
Short Description
E3 Ubiquitin ligase family protein
Computational Description
E3 Ubiquitin ligase family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), E3 Ubiquitin ligase (InterPro:IPR022170); BEST Arabidopsis thaliana protein match is: E3 Ubiquitin ligase family protein (TAIR:AT1G59560.1); Has 1960 Blast hits to 1959 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1182; Fungi - 34; Plants - 350; Viruses - 140; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-31-D21 introduced

  • F12415 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds