1. Home
  2. Full-length cDNAs
  3. RAFL09-31-E09

RAFL09-31-E09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05840)

full reading [+] show sequence

Nucleotide sequence: RAFL09-31-E09 - full reading 
ATCCGCCGGA AAATTCGTAA ATTTGACCCT TCGTCTTCGG AAATGGCGGC 
TATTTCTCCG GCGAATGCAA CCACCGCTGC TTCACTCTCC CTGCCTCAAT 
TTAGCTCAAC TTCTTCCTCG TTATCTTCTT CTTCGTCTCC ATCGTTTCTT 
AATTTCAAAA CTGCTTCAGT CAGTAATCGC TGCATCAAGT GCGGAGTCAG 
AAGCTTAGAG AACCACTCTG GTCACCGGAG CCTCGATTTC TTATCCAATG 
GGGATCCGAT CAGCCTAATT AATCCGAATT CATCGTCTCC TATAACCATG 
GCCGCGGCGA CGTCGGAATC CGGTTCGAAG AGCTCTAAGC GCGTCTGTCT 
CTTCCACAGC GACGAGACTA GAGATCTCGC CGAGAGAATC GTCGCAAAAT 
CTGATTGCAT TGAGCTACGA AGCATCAATT GGAAGAAATT TGATGATGGA 
TTCCCTAATT TGTTCATACA AAATGCTCAA GGCATTCGTG GGCAGCATGT 
TGCTTTCTTG GCTTCATTCA GTTCACCTGC TGTGATCTTC GAGCAGCTTT 
CGGTTATTTA TGCTCTGCCT AAGCTTTTTG TTTCTTCGTT TACACTTGTT 
CTTCCATTCT TTCCTACTGG AACTTCTGAG AGAATGGAAG ACGAAGGAGA 
TGTGGCCACT GCTTTTACTC TCGCTAGGAT ACTCTCTAAT ATTCCGACTT 
CGAGAGGAGG ACCGACTAGC CTAGTGACCT TCGATATACA TGCCTTGCAG 
GAAAGATTCT ACTTTGGTGA TACTATACTT CCATGCTTTG AAAGTGGTAT 
ACCATTGCTC AAGAGCAGAC TCCAGAGTCT ACCTGATTCT GATAACATAT 
CTATTGCATT CCCAGATGAT GGAGCATGGA AGCGTTTCCA CAAGCAACTC 
CAACATTATC CAACGATTGT TTGCAACAAA GTAAGAATGG GAGACAAACG 
AATAGTGCGT ATCAAAGAGG GAGACGCTGA AGGAAGGCAC GTCGTGATTG 
TTGATGATTT GGTTCAGTCG GGTGGCACAT TAATCGAATG CCAGAAAGTC 
TTAGCTGCAC ATGGAGCAGC GAAGATAAGC GCATATGTAA CACACGGGAT 
CTTCCCCAGG AGTTCATGGA AACGTTTCAA GCTTGACACC AAAGGTGATC 
CCGCGGAAGG TCTGAGCTAT TTCTGGATCA CAGACTCGTG TGGGATGACT 
GTGAAAGAGG TGATGAATAA ACCTCCTTTT GAAGTTCTTA GCCTGGCTGG 
CTCCATAGCT TCTGCTCTTC AAGTTTAAGC TTATGTGATT CGAGAAGAAA 
TCCAGCCGCA AGTAATTTTT GGGTTTGAAC AAATCTGATT TATAAACTTT 
GGTGTATAGT TCTCGATCAA AGCATTTTCC ACGGAAGAGG TTATTTGTTG 
TTAATGTTCT GTAGGAAAAT CCAATAATGT AATAATGTTT CTTCTGTCAA 
AGAGAGAAAA AAAAAACAAT GTTTCATTTC ACTTCTTTTA TACTTGTTGA 
TAGACAGG

Gene models with high sequence identity

  1. AT1G10700.1 [+] show detail - phosphoribosyl pyrophosphate (PRPP) synthase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE-RELATED 0
HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 0
HMMPfam Phosphoribosyltransferase 8.9e-08
superfamily PRTase-like 3.1e-21
superfamily PRTase-like 1e-16
HMMTigr Phosphoribosyl pyrophosphokinase 1.7e-21
Gene3D no description 3.8e-06
Gene3D no description 1.4e-18

See the detailed result >

AT1G10700.1

Model type
Protein coding
Short Description
phosphoribosyl pyrophosphate (PRPP) synthase 3
Curator Summary
Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.
Computational Description
phosphoribosyl pyrophosphate (PRPP) synthase 3 (PRS3); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: nucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946); BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G42910.1); Has 9536 Blast hits to 9535 proteins in 2732 species: Archae - 207; Bacteria - 5887; Metazoa - 527; Fungi - 344; Plants - 201; Viruses - 8; Other Eukaryotes - 2362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-31-E09 introduced

  • F11914 - Specific phenotypes were NOT observed.
  • F22709 - seed::increased size / seed::increased length
  • F23809 - seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found