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RAFL09-31-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05853)

full reading [+] show sequence

Nucleotide sequence: RAFL09-31-H08 - full reading 
GATGCTACTT CTGATTTACC CTTTCTCTGC TTTTTTCTCT CACTCTCTCA 
GTTTTCTCCT CCTTGATTCC TAAAGTCTTC TCCTTTGCGT GCATTTCTTC 
AATTTTCAGA TTCTTCCTAA GGTGGTAGAA TGATGAAATG AGAATCGATA 
GATAAGAGTT TAAAGAGCAC CAGAATCTTT GTTATCTTGC AATGTCGACG 
ACGTCTTTGC AAACGATTGG TGCTATTAAG TCTTATCATC ATCAAGCTCA 
GCATTTGGTT AAGAATTATC TCTTAGCTGA TCCTTTTATT CCTTACACTT 
CTGTCCTCAC CGGCATTTTC CTTTGCAAAG TGGTTTATGA TCTTTGTCAT 
TTTATCAGCA ACTCACATTC TAAGACTTAT ATCATCCTCA CGAAAATTCA 
AAGAATCGAA TGGAATAACC GTGGTATCTC GACAGTTCAT GCTATTTTTA 
TTTCGGCTAT GTCGCTGTAC TTTGTGTTCT GGTCCGACCT CTTTTCCGAT 
AGGTGGCATA ATGATCTTGT TGTTTTCCGG AGCTCACGAC TTTCTTCTCT 
TGGTTTAGGG ATATCTATTG GTTACTTCCT TGCTGATCTT GGGATGATCT 
TCTGGAAATA TCCTTCTTTG GGTGGAATTG AGTATATTGT GCATCACTCG 
CTATCGGGGG TTGCAGTTGC CTACTCTTTA TTTTCCGGGG AAGGACAGTT 
ATATACCTAC ATGGTCCTCA TCTCCGAGAT TACAACCCCA GAGATCAACT 
TGAGATGGTA CCTGGACACG GCTGGTATGA AAAAATCATT GGCATACGTT 
GTTAATGGCG TTTTCATCTT CTTGGCTTGG CTGGTTGCTA GAATTCTACT 
GTTCATATAC ATGTTTTATC ATGTTTATCT CCACTACAAC CAGGTCATGA 
GGATGCACAT CTTTGGTTAC GTTCTGGTAT TCGGCGTACC AGCTGCGCTC 
GGTGTCATGA ACTTGATATG GTTCGGGAAG ATTGTGAGAG GGGTAAAGAA 
AACATTAGCA AAGAGATGTG AATGTTGAGA TTGGTGAGTC TTCCTCACAC 
CGTTTCTTCA CTTCATCATC TCCTTACTTC TTCGTCCCTC TGACATATGC 
CTGTCTCTCT AGTGTAAGTA GTTTTTGTCT GATGAAGAAA AAAAAACGAA 
AAAACAAAAA TGATAATGAT ACGATCCTCT GACTCTGTAA ATGATCAAAA 
TTCAAGTCTC TTCTTTACGT TTTCTCATTA TACAATGTAA TTCTGTTTTC 
ATTCTAATAG TTTTGGTTCT AGGGTTTTGA TTCAATTTCT GCTACATTTC 
GTTTAACCGG AGTTCGATAC AGTACTACCA AAATGATGAA CAACTGTTTG 
GTGTTCAAGT TCTATGGAAG AGAAAACATT TGGTCT

Gene models with high sequence identity

  1. AT1G31300.1 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPanther CT120 PROTEIN 0.00021
HMMPfam TRAM/LAG1/CLN8 homology domain 1e-33
HMMSmart TRAM/LAG1/CLN8 homology domain 2.7e-53
ProfileScan TRAM/LAG1/CLN8 homology domain 33.424

See the detailed result >

AT1G31300.1

Model type
Protein coding
Short Description
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Computational Description
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 633 Blast hits to 633 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 146; Plants - 152; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-31-H08 introduced

  • F01620 - seed::increased size / seed::increased length
  • F20217 - Specific phenotypes were NOT observed.
  • F24450 - rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

7 mutant lines found