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Full-length cDNAs
RAFL09-31-J04

RAFL09-31-J04

RIKEN Arabidopsis Full-length cDNAs

CCGTTCGTCC TTCTCACAAG TCTGATTGCG GAAAAAGCAG AGAGAGAGAG 
AAAGTTCGAG CGGAAGAGAA GCGGAAAGCT CGAGGAGTCA TCAATGGTGA 
CGGACGATAG CAACTCCTCT GGACGAATCA AGTCTCATGT AGATGATGAT 
GATGATGGTG AAGAAGAAGA AGATAGACTC GAGGGTTTGG AAAACAGATT 
AAGTGAGCTT AAAAGGAAAA TTCAAGGAGA AAGAGTTAGG TCTATTAAAG 
AGAAATTTGA GGCTAATAGA AAGAAAGTGG ATGCTCATGT TTCTCCCTTT 
TCATCTGCTG CATCGAGCCG AGCTACCGCA GAGGATAATG GAAATAGCAA 
TATGCTTTCT TCGAGAATGA GAATGCCACT CTGCAAGTTA AATGGTTTTT 
CTCATGGTGT GGGAGATAGA GACTATGTTC CTACTAAGGA TGTTATATCA 
GCAAGTGTCA AGCTTCCTAT TGCTGAGAGA ATACCGCCAT ACACTACCTG 
GATATTTTTG GACAGAAATC AAAGAATGGC TGAAGATCAG TCTGTGGTTG 
GTCGAAGACA AATCTACTAT GAACAACATG GTGGTGAGAC GCTAATATGC 
AGCGATAGTG AGGAAGAACC AGAACCTGAG GAGGAAAAAC GTGAATTTTC 
CGAGGGTGAA GATTCCATTA TATGGTTAAT TGGGCAGGAG TATGGCATGG 
GTGAGGAAGT GCAGGATGCC CTTTGCCAGT TGCTAAGCGT AGATGCTTCT 
GATATCCTAG AAAGATACAA TGAGCTCAAG TTGAAGGATA AGCAGAATAC 
CGAGGAATTT TCTAATTCCG GATTCAAGCT GGGAATATCT CTGGAAAAGG 
GCCTTGGTGC AGCTCTAGAT TCTTTTGATA ATCTTTTCTG CCGCCGTTGC 
TTGGTATTTG ACTGTCGTCT GCATGGATGT TCTCAGCCTT TGATTAGTGC 
TAGTGAAAAA CAGCCTTATT GGTCTGATTA TGAAGGTGAT AGGAAACCCT 
GCAGCAAACA TTGTTACCTC CAGCTCAAGG CGGTCAGAGA AGTACCAGAA 
ACATGCAGTA ATTTTGCATC TAAAGCAGAA GAGAAAGCTT CAGAAGAGGA 
ATGCAGCAAG GCTGTCTCCT CTGATGTTCC CCATGCTGCT GCTAGTGGTG 
TCAGTCTGCA AGTTGAGAAG ACTGATATTG GTATCAAGAA TGTAGATTCA 
TCCTCTGGTG TAGAACAAGA GCATGGAATT AGAGGAAAGC GTGAGGTCCC 
AATTCTAAAA GACTCCAATG ATCTGCCTAA TTTATCGAAC AAGAAACAGA 
AGACCGCAGC CTCAGATACA AAAATGTCAT TTGTTAATTC TGTCCCTAGC 
TTAGATCAGG CATTGGATAG CACAAAGGGT GATCAAGGTG GAACAACTGA 
CAATAAAGTA AACAGAGACT CAGAAGCTGA TGCAAAAGAA GTAGGTGAGC 
CTATTCCAGA CAATTCGGTC CATGATGGTG GTTCCTCAAT TTGTCAGCCA 
CACCATGGTA GTGGAAACGG AGCAATAATC ATTGCAGAAA TGTCTGAGAC 
AAGTCGACCA TCTACAGAGT GGAATCCTAT CGAGAAGGAT CTTTACTTGA 
AGGGAGTCGA AATCTTTGGA AGAAACAGCT GTCTTATTGC AAGAAACCTG 
CTTTCTGGCT TGAAGACATG CCTAGATGTG TCCAATTACA TGCGTGAAAA 
CGAAGTTTCA GTTTTTCGAA GATCTAGTAC CCCAAATTTG CTGTTGGATG 
ATGGCAGGAC TGACCCAGGG AATGATAATG ATGAGGTGCC TCCAAGGACA 
AGATTGTTCC GTAGAAAAGG CAAAACCCGG AAGCTAAAAT ACTCTACAAA 
GTCTGCTGGT CATCCGTCTG TCTGGAAAAG AATAGCTGGT GGCAAAAACC 
AGTCCTGTAA ACAATACACG CCGTGTGGAT GCCTGTCAAT GTGCGGAAAG 
GATTGCCCTT GTCTAACTAA TGAAACTTGC TGCGAGAAAT ATTGCGGGTG 
CTCAAAAAGC TGTAAAAATC GTTTCCGAGG ATGTCATTGT GCAAAGAGTC 
AATGCAGAAG TAGGCAGTGT CCCTGCTTTG CTGCTGGCAG AGAATGTGAT 
CCAGATGTTT GCAGAAATTG CTGGGTTAGT TGTGGAGATG GTTCTCTCGG 
TGAAGCACCA AGACGCGGAG AAGGGCAATG CGGAAACATG AGACTTCTCC 
TGAGGCAACA ACAGAGGATC CTATTGGGAA AGTCTGATGT TGCTGGATGG 
GGTGCTTTTC TAAAGAACTC GGTCAGCAAA AATGAATACC TTGGAGAATA 
CACCGGTGAA TTGATCTCAC ACCATGAGGC GGATAAGCGT GGGAAAATAT 
ATGACCGGGC AAATTCGTCC TTCCTCTTTG ACTTGAATGA TCAGTACGTC 
CTCGATGCTC AACGCAAAGG TGACAAGCTG AAATTTGCCA ATCACTCAGC 
TAAACCCAAT TGCTACGCTA AGGTGATGTT TGTAGCAGGA GATCACAGGG 
TCGGGATTTT TGCAAACGAA CGAATAGAAG CTAGCGAAGA GCTTTTCTAT 
GACTATAGAT ATGGACCAGA CCAAGCACCA GTGTGGGCTC GCAAACCTGA 
AGGCTCCAAG AAAGATGATT CAGCCATTAC TCATCGTAGA GCCAGAAAGC 
ACCAATCTCA TTGATGATTA CTGGCTAAGA GAAGTAACTT TTATAAAAAT 
AACTTATAGA GTTGTGAGAG ATGATATTTG AAGTTTGATA ACTTAAGCTT 
GTCTTTATTA ATTAATTATT ATAGAGTTGA GATTTTATTC T

Gene models with high sequence identity

AT4G02020.1 [+] show detail - SET domain-containing protein
E-value: 0; Score: 99.96

InterPro Scan Digest

Program	Description	E-value
superfamily	SET domain	5e-61
Coil	coiled-coil	0
Coil	coiled-coil	0
ProfileScan	SET domain	30.465
HMMPanther	ENHANCER OF ZESTE, EZH	2.7e-208
HMMPanther	SET DOMAIN PROTEINS	2.7e-208
HMMPfam	SET domain	3.8e-17
HMMSmart	SANT, DNA-binding	0.0066
HMMSmart	SET domain	1.4e-33

See the detailed result >

AT4G02020.1

Model type: Protein coding
Short Description: SET domain-containing protein
Curator Summary: Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
Computational Description: SWINGER (SWN); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT2G23380.1); Has 5041 Blast hits to 4734 proteins in 465 species: Archae - 0; Bacteria - 399; Metazoa - 2132; Fungi - 472; Plants - 1030; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-31-J04 introduced

F12438 - seed::increased size / seed::increased length
F13503 - Specific phenotypes were NOT observed.
F30442 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found