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RAFL09-32-C09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05898)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-C09 - full reading 
ACATATCCGC CATTGTTTCC GGCAACGCAA ACTACCAAAA AAAATAATGG 
AGGTCGAAAG AGTCCAAGAC ATTTCATCTT CTTCTCTACT AACAGAAGCA 
ATCCCGTTGG AGTTCATCAG ATCAGAGAAA GAACAACCAG CGATCACAAC 
ATTCCGAGGT CCAACGCCGG CGATTCCCGT CGTCGATCTA AGCGATCCCG 
ACGAAGAAAG CGTGAGGCGC GCGGTGGTGA AAGCGAGTGA AGAATGGGGG 
CTATTCCAAG TGGTTAACCA CGGGATTCCG ACGGAGCTGA TACGACGTTT 
ACAAGACGTC GGAAGAAAAT TCTTCGAGCT TCCTTCGTCG GAGAAAGAAT 
CCGTCGCTAA ACCGGAAGAT TCGAAAGACA TTGAAGGATA CGGAACAAAG 
CTTCAGAAAG ATCCAGAAGG TAAAAAAGCT TGGGTCGATC ATCTCTTCCA 
TCGAATCTGG CCACCGTCAT GCGTCAATTA CAGATTCTGG CCTAAGAATC 
CACCTGAATA CAGGGAGGTG AATGAAGAGT ATGCAGTGCA TGTGAAGAAG 
CTATCGGAGA CGTTATTAGG GATTCTCTCG GATGGATTAG GGTTAAAGCG 
TGATGCGTTG AAAGAAGGTC TCGGCGGAGA GATGGCGGAG TATATGATGA 
AGATTAACTA TTATCCGCCG TGTCCTCGGC CGGATTTAGC TTTAGGTGTA 
CCGGCTCATA CAGATCTCAG TGGAATCACT CTTCTTGTTC CTAACGAAGT 
TCCTGGACTT CAAGTTTTCA AAGATGATCA CTGGTTCGAT GCAGAGTATA 
TTCCCTCCGC CGTCATTGTT CACATCGGCG ATCAGATTCT GAGGTTGAGT 
AATGGGAGGT ATAAAAATGT GTTGCATAGG ACGACGGTGG ATAAAGAGAA 
GACGAGGATG TCGTGGCCGG TTTTCTTGGA GCCTCCCCGT GAAAAGATTG 
TTGGACCTTT ACCGGAACTA ACCGGAGATG ATAATCCTCC AAAGTTTAAA 
CCGTTTGCTT TCAAGGATTA CAGTTACCGC AAGCTCAATA AACTTCCTCT 
GGATTGAGAA AAATCAATAC GAGAAGAATA ATTTGTGGTT GTGGAATAGG 
AAGTGGTTCG TTATTGAGTT GTTGTTTTCC CGCGGTTGTG TCTCTTGCTT 
ATTGTTATTT TATGTTTAAA ATAAAGATTA AAACATCTAC CTACATTGTG 
TGTGATGTTG ACATGTTTTT ATTGTGTTGC GATGCCTTTG CAAGTTATGT 
CGGACCATTT TTAGGCATTG GAAAGAGTAG GTTTGTATTT TGTAAATTTT 
TAACCTGTCA CGGAAAAAAA TCGGTGATC

Gene models with high sequence identity

  1. AT5G08640.1 [+] show detail - flavonol synthase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 7.7e-101
HMMPanther FLAVONOL SYNTHASE 6.6e-213
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 6.6e-213
HMMPfam Oxoglutarate/iron-dependent oxygenase 1.9e-22
superfamily Clavaminate synthase-like 1.5e-102

See the detailed result >

AT5G08640.1

Model type
Protein coding
Short Description
flavonol synthase 1
Curator Summary
Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.
Computational Description
flavonol synthase 1 (FLS1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: flavonol synthase 3 (TAIR:AT5G63590.1); Has 8476 Blast hits to 8432 proteins in 992 species: Archae - 0; Bacteria - 1104; Metazoa - 92; Fungi - 925; Plants - 4948; Viruses - 0; Other Eukaryotes - 1407 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-C09 introduced

  • F04602 - seed::increased size / seed::increased length
  • F07440 - flower::abnormal / fruit::decreased length / stem::abnormal
  • F21224 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found