1. Home
  2. Full-length cDNAs
  3. RAFL09-32-C10

RAFL09-32-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05899)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-C10 - full reading 
ATCAAGAACC ATAAGCTAAA GAGGGTTCGG TTCTTTAAAC CCCTCCATCT 
CTCTCTCCTT CATTACACTG TAGAGTGTTA AAGTACCACT CTATAGCCAT 
GGCTTCCTCT TCTTCATCTC TAGCTTTCTC TCTTTCTCTT CTTCTAGCTT 
TAATCCTCTG TTTCTCACCC ACCCAATCCT ACAAAACCAT CGGCAAAGGC 
TACCGTTTGG TCTCCATCGA AGAATCTCCC GACGGTGGTT TCATTGGTTA 
TCTCCAAGTC AAACAAAAGA ACAAAATCTA CGGCTCTGAT ATCACCACTC 
TTCGTCTCTT CGTCAAGCAC GAAACTGATT CACGTCTTCG TGTTCACATC 
ACTGACGCGA AACAACAACG ATGGGAAGTT CCATACAATC TCCTCCCACG 
AGAACAACCA CCACAAGTCG GAAAAGTCAT CGGAAAATCA AGAAAATCTC 
CAATCACAGT TCAAGAAATC TCCGGATCCG AACTTATCTT CAGTTACACA 
ACAGATCCAT TCACTTTCGC CGTGAAACGT AGATCTAACC ACGAAACACT 
CTTCAACACA ACAAGCTCAT TAGTGTTCAA AGATCAATAC CTAGAGATCT 
CAACTTCATT ACCAAAAGAA GCTTCACTCT ATGGTTTAGG TGAAAACTCA 
CAAGCTAATG GTATCAAACT CGTACCTAAC GAGCCTTATA CTCTTTACAC 
TGAAGATGTT TCAGCTATCA ATCTTAACAC TGACCTTTAT GGTTCGCATC 
CGATGTATAT GGATCTAAGA AACGTTGGAG GTAAAGCTTA TGCTCATGCT 
GTTCTTCTTT TGAATAGTAA TGGTATGGAT GTTTTCTATA GAGGTGATTC 
TTTGACGTAT AAAGTTATCG GAGGTGTTTT CGATTTCTAT TTCATCGCCG 
GACCGTCGCC GTTAAATGTT GTTGATCAGT ATACTCAGTT AATCGGAAGA 
CCTGCTCCTA TGCCGTACTG GTCTTTAGGA TTTCATCAAT GTAGATGGGG 
ATACCATAAT CTATCAGTTG TTGAAGATGT GGTGGATAAT TACAAAAAGG 
CTAAGATCCC ACTTGATGTG ATTTGGAACG ATGATGATCA CATGGATGGT 
CACAAAGATT TCACGTTGAA TCCTGTGGCT TATCCTCGTG CTAAGCTATT 
GGCGTTCTTG GACAAAATCC ACAAGATTGG AATGAAGTAT ATTGTGATCA 
ATGATCCTGG TATTGGTGTC AACGCTAGCT ACGGTACATT TCAGAGAGCC 
ATGGCTGCTG ATGTGTTTAT TAAGTATGAA GGAAAGCCAT TCTTGGCTCA 
AGTGTGGCCT GGTCCGGTTT ACTTCCCTGA TTTCCTTAAC CCGAAGACGG 
TTTCTTGGTG GGGTGATGAA ATCAAACGGT TCCATGATTT AGTCCCTATT 
GATGGTTTAT GGATTGACAT GAACGAGGTG TCGAACTTTT GTTCTGGTTT 
ATGCACAATC CCTGAAGGAA AGCAGTGTCC AAGTGGGGAA GGTCCTGGTT 
GGGTTTGTTG CTTGGACTGC AAGAATATAA CCAAGACTAG ATGGGATGAT 
CCTCCTTACA AGATTAATGC TACTGGTGTC GTAGCTCCTG TTGGGTTCAA 
GACTATTGCT ACAAGTGCTA CTCATTACAA TGGTGTTCGA GAGTACGATG 
CTCACAGTAT CTACGGATTC TCTGAGACCA TCGCAACTCA CAAGGGCTTA 
CTTAATGTCC AAGGCAAACG TCCCTTCATT TTATCCCGGT CTACTTTCGT 
TGGTTCGGGT CAATATGCGG CTCACTGGAC CGGAGATAAC CAAGGAACAT 
GGCAGAGCTT GCAAGTGTCT ATCTCAACTA TGTTGAACTT CGGTATATTT 
GGAGTTCCCA TGGTTGGTTC AGACATTTGT GGATTCTACC CACAACCAAC 
AGAAGAACTC TGCAACCGTT GGATCGAAGT AGGCGCGTTT TACCCGTTTT 
CAAGAGATCA CGCCAATTAC TACTCACCAA GACAAGAGCT TTACCAATGG 
GACACAGTTG CAGACTCAGC TCGTAACGCT CTTGGTATGA GATACAAGAT 
CCTTCCTTTC CTCTACACTC TTAACTACGA AGCGCATATG ACTGGTGCAC 
CCATCGCTAG ACCGCTCTTC TTCTCATTCC CTGAATACAC CGAATGTTAC 
GGCAACAGCA GACAGTTCTT GCTTGGAAGC AGCTTCATGA TATCTCCGGT 
TCTCGAGCAA GGCAAAACCG AAGTAGAAGC ATTGTTCCCA CCAGGTTCTT 
GGTACCACAT GTTCGACATG ACTCAAGCAG TAGTGTCCAA GAACGGGAAA 
CGTGTAACTC TCCCAGCTCC TTTGAACTTT GTGAACGTTC ATCTTTACCA 
AAACACTATC TTACCAACGC AACAAGGCGG GTTGATTTCC AAGGACGCAA 
GAACAACACC GTTTAGCCTC GTCATTGCTT TCCCTGCAGG AGCTTCTGAA 
GGTTACGCCA CCGGGAAACT CTATCTAGAC GAAGACGAGC TTCCGGAAAT 
GAAGCTAGGA AATGGACAGT CCACGTACGT TGACTTCTAC GCTTCGGTCG 
GAAACGGGAC AATGAAGATG TGGTCACAAG TTAAAGAAGG TAAGTTTGCA 
TTGAGCAAAG GATGGGTGAT TGAGAAAGTG AGTGTTTTGG GACTTAGAGG 
AGCAGGACAA GTGTCTGAGA TTCAAATCAA TGGAAGTCCA ATGACAAAGA 
AGATTGAGGT TAGCTCGAAG GAGCATACCT ATGTGATTGG TTTGGAAGAT 
GAAGAAGAGA ACAAGAGTGT GATGGTTGAG GTTAGAGGAC TTGAGATGCT 
TGTTGGAAAG GATTTTAACA TGTCCTGGAA AATGGGTATC AATTAATTTA 
CATGTGAGAG TTGGTAAACT ATTGAGGAGG AGAATGAGAT TATTTAAAAA 
AAAAGGGTAA TGTTTTGTTC TTCTCCATTT CGGATTATAA GAAAGAAAAA 
AAGAATTAGA GGTTTGGTTT TAGATTGTGT CTCTGTCTTT TTATTAAAAG 
ATGCTTTAGT CTGAATAAAA TTTGAAGCAG AAGAAGTGTT ACTTCATTGG 
CTTATCT

Gene models with high sequence identity

  1. AT1G68560.1 [+] show detail - alpha-xylosidase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ALPHA-GLUCOSIDASE 0
HMMPanther Glycoside hydrolase, family 31 0
PatternScan Glycoside hydrolase, family 31 0
superfamily Glycoside hydrolase, catalytic core 3.1e-14
HMMPfam Glycoside hydrolase, family 31 1.1e-166

See the detailed result >

AT1G68560.1

Model type
Protein coding
Short Description
alpha-xylosidase 1
Curator Summary
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-C10 introduced

  • F29117 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found