1. Home
  2. Full-length cDNAs
  3. RAFL09-32-I20

RAFL09-32-I20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05932)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-I20 - full reading 
AGAAACACCG CCTTTAACGT CTCGCTGCAC CATTTTTCAT CGTTGATCAG 
TCGTCGATCC TCTTGAGTGA TTTGATTTTA GACTTTCTAG TTATCAAACT 
CGAAAGATGG ATTCTGTCCT TGTAGTGGGC ATTGCATCGG TTATTCTCGG 
TGCGTTGATC GCTGTACTCT TCTTCGGTAG CTACTTCCGG AAGCGGACAT 
CGGAGGTGCA ATCCATGGCC AAAGCGGAGC CTCAGGATCC GATCCGGAAT 
CCAAAGTCGA ATCATCCTGC TCCGAAGAAG AATCATCCCA AATCTCAAGC 
GTCCGATAAG AATCAGAACA AACGGCATCA TCCTTTAGAT TTAAACACGT 
TGAAAGGCCA CGGTGATGCT GTTACTGGAC TCTGTTTCTC GTCCGATGGA 
AAGAGCTTGG CCACAGCTTG CGCTGATGGA GTAATCAGGG TGTTCAAGCT 
AGATGATGCA TCAAGCAAAA GCTTCAAATT TTTAAGGATA AATCTTCCTG 
CTGGAGGACA TCCAACCGCC GTGGCATTTG CTGACGATGC CTCATCTATT 
GTTGTGGCTT GTCATCATAT GTCTGGTTCA TCTTTGTACA TGTACGGTGA 
AGATAAGCAA AAGGATCAGC AAGGGAAGCT TCCTCTTCCT AGTATCAAAT 
GGGACCACCA TCATATTCAT GAGAAGAGAT CAGTGCTTAC CATCTCTGGA 
GCTACTGCAA CTTACGGTAC TGCTGATGGA AGTGTTGTCA TTGCCTCTTG 
TTCTGAAGGG ACTGATATCG TCCTTTGGCA TGGGAAAACT GGGAGGAATT 
TGGGACATGT TGATACAAAC CAGTTGAAGA ACCACATGGC AGCTGTATCA 
CCAAATGGAC GTTTTTTGGC AGCTGCAGCA TTTACTGCAG ATGTGAAAGT 
GTGGGAAATT GTGTATCAGA AAGATGGTTC TGTGAAAGAG GTTTCAAGAG 
TTATGCAACT TAAAGGCCAC AAGAGTGCAG TGACTTGGTT ATGCTTTTCT 
CCAAACTCAG AGCAAATCAT CACCGCTTCA AAAGATGGTT CAATAAGAGT 
CTGGAACATC AATGTCCGTT ATCATCTTGA TGAGGATCCA AAGACTTTGA 
AGGTGTTCCC GATTCCACTT TGCGACTCAG GAGGCAATCC GTTGCACTAT 
GATCGTCTCA GCTTATGCCC AGAGGGAAAG ATATTGGCAG CAAGCCATGG 
TTCCACATTG CAGTGGTTAT GTGCTGAAAC TGGAAATGTC TTGGACACAG 
CTGAGAAAGC CCACGAAGGG GATATCACAT GCATATCTTG GGCACCCAAG 
GCTATTACAG TTGGGGAAAG ACATGCCATG GTTTTGGGGA CATCAGGCGA 
TGACAAGAAA GTGAAGCTGT GGGAAGCTCC AAAGTCGCAA TCTTTGTAGG 
CTCTCGCATA CACGTAGTCC CTTGATGACA TGAGGCGTAT TTAAACGGTA 
CAACTTGCGA GGAAAAAAAC TCTAATAGGT TTTGTTTCGA GTCCCAAGTT 
GGGATCAAAT GAAGGGTGGT TTAAAGTCCT TCTTGTTACC AAGTGTCTTT 
TAACTTCTGA AGTTTTGAAT TTTGCTCATA GGACTAGTAC AACACTCACA 
GTCTTCTATG TTTTCCAAAT TAAGGAAATT TAAAAAGCAC ACAACAACAC 
TAAGAAATAT GAATCGATTA AAATTATTAT ACGCAG

Gene models with high sequence identity

  1. AT4G00090.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart WD40 repeat 0.000000033
HMMSmart WD40 repeat 37
HMMSmart WD40 repeat 0.00000000016
HMMSmart WD40 repeat 0.0064
superfamily WD40 repeat-like-containing domain 1.3e-38
HMMPanther TRANSDUCIN BETA-LIKE 2 PROTEIN 3.6e-26
HMMPanther WD40 REPEAT PROTEIN 3.6e-26
PatternScan WD40 repeat, conserved site 0
PatternScan WD40 repeat, conserved site 0
Gene3D WD40/YVTN repeat-like-containing domain 2.9e-36
ProfileScan WD40 repeat 2 11.511
ProfileScan WD40 repeat 2 15.922
ProfileScan WD40 repeat 2 9.172
ProfileScan WD40-repeat-containing domain 10.944
ProfileScan WD40-repeat-containing domain 16.296
ProfileScan WD40-repeat-containing domain 9.098
HMMPfam WD40 repeat, subgroup 0.000000019
HMMPfam WD40 repeat, subgroup 0.00000000008
HMMPfam WD40 repeat, subgroup 0.0000012

See the detailed result >

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-I20 introduced

  • F28528 - seed::increased size

Mutant lines with disrupted or induced

33 mutant lines found