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  3. RAFL09-32-K15

RAFL09-32-K15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05943)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-K15 - full reading 
ACCTCTGATA AGTCCCACTT ACCATTTTCT CCTGAACTCT GTAGAAAGAT 
CCGAATTGAA TATTTCGGAC CCGAAACCTG ACCCGCTTTG ATGGGCTGGA 
TTCCGTGTCC GTGCTGGGGA ACCAACGACG ATGAAAACGC CGGCGAGGTG 
GCGGATCGTG ATCCGGTGCT TCTAGTATCT GGAATTGGAG GCTCTATTCT 
GCATTCTAAG AAGAAGAATT CAAAGTCTGA AATTCGGGTT TGGGTCCGAA 
TATTTCTAGC TAACCTTGCC TTTAAGCAGA GCCTCTGGTC TCTCTATAAT 
CCCAAAACTG GTTATACAGA GCCGTTGGAT GATAATATTG AAGTATTGGT 
CCCTGATGAT GACCATGGAC TCTATGCAAT TGACATTCTA GATCCCTCTT 
GGTTTGTAAA GCTTTGTCAC TTGACGGAGG TTTATCACTT TCACGATATG 
ATAGAAATGC TGGTTGGATG CGGTTATAAG AAGGGGACTA CATTATTCGG 
TTATGGTTAC GATTTCCGTC AAAGCAATAG GATCGATCTA CTTATACTAG 
GTCTGAAGAA GAAGCTGGAA ACTGCATATA AACGTTCAGG GGGGAGAAAA 
GTCACTATCA TCTCCCATTC AATGGGAGGA CTTATGGTTT CATGTTTCAT 
GTATCTCCAT CCGGAGGCAT TTTCCAAGTA TGTAAATAAA TGGATTACAA 
TTGCAACACC TTTCCAAGGA GCACCAGGGT GCATCAATGA TTCAATCTTG 
ACTGGAGTGC AATTTGTGGA AGGGTTAGAA AGTTTCTTTT TTGTGTCACG 
TTGGACGATG CACCAACTGT TGGTCGAATG CCCATCTATA TATGAGATGA 
TGGCAAATCC AGACTTTAAG TGGAAAAAGC AACCAGAGAT TCGAGTTTGG 
CGTAAGAAAT CTGAAAACGA CGTTGATACT TCTGTAGAAC TGGAATCATT 
TGGCTTAATC GAGAGTATTG ATCTATTCAA CGATGCATTA AAAAATAACG 
AGCTAAGCTA TGGTGGGAAT AAAATAGCTT TGCCCTTTAA CTTTGCTATC 
CTCGACTGGG CTGCTAAGAC AAGAGAAATT CTCAACAAAG CGCAACTTCC 
TGATGGAGTG TCCTTCTATA ACATATATGG AGTGTCACTT AATACACCCT 
TTGATGTTTG TTATGGCACA GAGACTTCTC CGATAGACGA TTTGTCTGAA 
ATATGTCAAA CTATGCCTGA GTATACATAT GTAGATGGAG ATGGAACTGT 
CCCTGCTGAA TCAGCTGCAG CTGCTCAGTT TAAAGCAGTT GCTAGCGTAG 
GAGTTTCGGG TAGCCACCGC GGGCTTCTCC GTGATGAAAG AGTGTTTGAG 
CTCATTCAAC AATGGTTAGG AGTTGAGCCC AAGAAGGCTA AACGGAAGCA 
TTTAAGGACT CACAAAGTAG TTGATTCTGG TTAAGTCCAA AGCCTAGTAA 
ACTAAAAGAT CTTGTTTGAA TAAGTTAAAA TGAAGAAATC GTTATTCAAA 
GTGTGGTTGT AATTATTTCT GCTATTTTTA TTGTACGTTG TGACATATGT 
ATGTGCATGA AATTGTAGTA GAAAGAAAAG TAATCTCATC AAAAATTAAT 
TGGGAGAAGA ATAAAAAAAA AAAAAAAG

Gene models with high sequence identity

  1. AT3G03310.1 [+] show detail - lecithin:cholesterol acyltransferase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 2.9e-43
HMMPanther LECITHINE CHOLESTEROL ACYLTRANSFERASE-RELATED 1.1e-140
HMMPanther Lecithin:cholesterol acyltransferase 1.1e-140
HMMPfam Lecithin:cholesterol acyltransferase 2.4e-29
Gene3D no description 1.3e-10

See the detailed result >

AT3G03310.1

Model type
Protein coding
Short Description
lecithin:cholesterol acyltransferase 3
Computational Description
lecithin:cholesterol acyltransferase 3 (LCAT3); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G19860.1); Has 560 Blast hits to 555 proteins in 155 species: Archae - 2; Bacteria - 82; Metazoa - 189; Fungi - 22; Plants - 147; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-K15 introduced

  • F02609 - seed::increased size / seed::increased length
  • F10507 - Specific phenotypes were NOT observed.
  • F11201 - Specific phenotypes were NOT observed.
  • F14916 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found