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  3. RAFL09-32-L06

RAFL09-32-L06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05948)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-L06 - full reading 
AGGGCAGAGT GACTGATACC AAAGGAGAAA CAACAAAGAG ACGAACTGAA 
GAAAAACCTC TCGGAAGAAG ATGAGCAATT GGAAAACTCT TCTCCTTCGC 
ATCGGCGAAA AGGGACCTGA GTACGGCACT TCCTCCGACT ACAAAGACCA 
CATCGAGACT TGTTTCGGTG TCATTCGTAG AGAAATCGAG CGTTCTGGAG 
ATCAAGTTTT GCCTTTTCTA CTACAATGTG CTGAACAATT GCCTCATAAG 
ATTCCTTTGT ATGGGACTTT GATTGGTTTG TTGAACTTGG AGAATGAAGA 
TTTTGTCCAG AAGCTAGTAG AAAGTGTCCA CGCTAATTTC CAGGTCGCTT 
TAGATTCTGG CAACTGCAAC AGTATCCGTA TATTGCTTCG CTTTATGACT 
TCCCTGTTGT GCAGTAAGGT TATTCAACCT GCTTCTTTGA TTGTCGTCTT 
CGAAACATTG CTATCATCTG CTGCCACTAC TGTGGATGAA GAGAAAGGAA 
ATCCATCATG GCAGCCACAA GCTGACTTTT ACGTTATATG CATCTTGTCC 
AGCCTCCCGT GGGGAGGATC AGAACTCGCT GAGCAAGTTC CTGATGAGAT 
TGAAAGAGTG TTAGTTGGGA TACAAGCTTA TTTGAGCATC CGAAAGAATT 
CTTCCACCTC TGGGTTAAAC TTTTTTCACA ACGGAGAATT TGAAAGCAGC 
CTTGCAGAGA AGGATTTCGT GGAGGATCTA TTGGATCGAA TTCAGTCTCT 
GGCTTCCAAT GGATGGAAAC TTGAAAGCGT ACCTAGGCCT CATCTCTCGT 
TTGAAGCTCA ACTCGTTGCT GGAAAGTTTC ATGAGCTACG TCCCATTAAA 
TGTATGGAAC AACCGAGTCC ACCTTCTGAT CATTCGAGGG CATACAGTGG 
CAAGCAAAAG CATGATGCAT TGACGAGATA TCCCCAGAGA ATTCGTAGGT 
TGAATATATT TCCAGCTAAT AAAATGGAGG ATGTACAACC AATTGATCGT 
TTTGTCGTGG AGGAGTATTT GCTGGATGTG CTCTTCTATT TGAATGGATG 
TCGGAAGGAG TGTGCATCCT ACATGGCTAA TCTTCCTGTT ACATTTCGGT 
ACGAGTATCT TATGGCAGAG ACACTATTTT CTCAGATACT GCTGCTACCC 
CAGCCACCAT TCAAGACTCT TTATTATACA CTCGTGATTA TGGATCTTTG 
TAAGGCTCTT CCGGGTGCCT TTCCTGCTGT TGTTGCTGGC GCTGTTCGTG 
CACTATTTGA GAAAATATCC GACTTAGACA TGGAATCCAG GACGCGTCTT 
ATCCTCTGGT TTTCTCACCA CTTATCCAAC TTCCAATTCA TCTGGCCGTG 
GGAAGAGTGG GCTTTTGTGT TGGATCTTCC CAAGTGGGCC CCTAAGCGTG 
TATTTGTTCA GGAGATTTTG CAAAGAGAAG TACGCTTGTC TTACTGGGAT 
AAAATTAAGC AGAGCATTGA GAATGCGACT GCCCTAGAAG AATTACTTCC 
TCCAAAAGCT GGTCCGAATT TTATGTATTC CTTGGAAGAA GGTAAAGAGA 
AAACAGAAGA ACAGCAATTG TCAGCCGAAT TGAGCAGGAA GGTCAAGGAA 
AAACAAACCG CACGTGACAT GATAGTGTGG ATTGAAGAAA CGATATATCC 
AGTTCATGGT TTTGAAGTTA CTCTTACAAT AGTTGTACAG ACCTTACTTG 
ACATCGGATC AAAAAGTTTC ACTCATTTGG TCACTGTCCT GGAGCGATAT 
GGCCAAGTAT TTTCAAAGCT TTGTCCTGAT AACGATAAGC AGGTGATGCT 
ATTATCTCAA GTGAGTACAT ACTGGAAAAA CAATGTACAA ATGACGGCGG 
TGGCAATTGA TAGGATGATG GGTTATAGAC TAGTATCTAA TCAGGCAATT 
GTTAGATGGG TGTTCTCTCC AGAAAATGTT GATCAGTTTC ATATGTCTGA 
TCAGCCATGG GAGATACTTG GCAATGCTCT TAACAAGACT TATAACCGTA 
TCTCTGATTT GAGGAAAGAT ATATCAAACA TTACGAAAAA TGTTTTGGTT 
GCTGAGAAAG CTTCAGCCAA TGCACGAGTA GAGTTGGAGG CTGCTGAGAG 
CAAACTTTCC CTAGTGGAAG GTGAACCCGT TCTTGGTGAG AATCCAGCGA 
AGATGAAGCG TTTAAAATCA ACAGTGGAGA AGACAGGGGA AGCGGAGTTA 
TCTCTTCGGG AGTCCCTAGA GGCAAAAGAG GCTCTTCTTA ACAGAGCTCT 
CTCTGAGACC GAGGTTTTAC TGCTCTTGCT GTTCCAAAGT TTCTTAGGTG 
TACTGAAGGA ACGGCTCCCA GATCCAACTA AAGTGAGATC AGTGCAGGAT 
CTAAAATCTA TAGGTGCTGA AGATGACAAG CCATCTGCGA TGGACGTGGA 
CAGCGAGAAT GGAAACCCAA AGAAGAGTTG CGAAGTCGGT GAGAGAGAAC 
AGTGGTGCTT ATCAACACTT GGCTATCTCA CGGCATTTAC AAGGCAATAT 
GCGAGCGAGA TATGGCCTCA CATGGAGAAG TTGGAGTCAG AAGTGTTCTC 
GGGTGAAGAT GTGCATCCTC TCTTTCTCCA AGCCATATCT TCTGCACTTC 
AATTCCCATT ACATTAATCT TCCTCTTTCA ATCTCAATCA AACCTGTCTC 
TTTTGTTTTT TGTTATGAGA TTCTGATTCT GACATCAAGT TATTAGGAAA 
TTGAAAAGAG TCAAAAAACA AGAGTTTAAA CTTCT

Gene models with high sequence identity

  1. AT2G13540.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMSmart MIF4G-like, type 3 3.6e-32
HMMPfam MIF4G-like, type 2 1.6e-55
HMMPfam MIF4G-like, type 1 2.3e-40
HMMPfam MIF4G-like, type 3 1.7e-31
Gene3D MIF4-like, type 1/2/3 7e-81
Gene3D MIF4-like, type 1/2/3 9.9e-57
Gene3D MIF4-like, type 1/2/3 3.2e-70
superfamily Armadillo-type fold 5.6e-83
superfamily Armadillo-type fold 1.7e-79
superfamily Armadillo-type fold 1.8e-64
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther CAP BINDING PROTEIN 0
HMMPanther CAP BINDING PROTEIN 0

See the detailed result >

AT2G13540.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).
Computational Description
ABA HYPERSENSITIVE 1 (ABH1); CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 514 Blast hits to 510 proteins in 229 species: Archae - 0; Bacteria - 96; Metazoa - 188; Fungi - 131; Plants - 55; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-L06 introduced

  • F09846 - seed::increased size / seed::increased length
  • F23727 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found