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  3. RAFL09-32-N13

RAFL09-32-N13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05960)

full reading [+] show sequence

Nucleotide sequence: RAFL09-32-N13 - full reading 
AACCGCACAA ACAAAATTTC AGCTCCTCCA TATCCATCAA GAAAGATCAA 
GAATCAAGAA CTAATCAATA TCGATCGATC CGTTAAAAAA AAATGGATAT 
GATTCCCCAA TTGATGGAAG GCTCTTCAGC TTACGGAGGT GTCACAAACC 
TCAACATCAT CTCAAACAAC TCCTCCTCCG TCACCGGAGC CACCGGAGGT 
GAAGCAACGC AACCACTGTC TTCCTCCTCC TCACCATCGG CGAACTCAAG 
CCGTTACGAG AACCAGAAGA GGAGAGACTG GAACACGTTC GGACAGTACT 
TAAGGAACCA TCGGCCACCG CTTTCGCTTT CCCGATGCAG TGGAGCTCAC 
GTGCTCGAGT TCCTCCGTTA CTTGGACCAG TTCGGTAAGA CAAAAGTCCA 
CACGAACATT TGTCACTTCT ATGGCCATCC TAATCCTCCG GCACCGTGTC 
CGTGTCCTCT CCGACAAGCT TGGGGAAGTC TTGACGCTCT TATCGGTCGT 
CTTCGAGCTG CCTTTGAGGA AAACGGAGGC AAGCCTGAGA CGAATCCTTT 
TGGAGCTCGT GCCGTTAGGC TTTATCTAAG GGAAGTTAGA GATATGCAGA 
GTAAAGCTAG AGGTGTTAGC TACGAGAAGA AGAAGCGAAA GCGTCCTCTT 
CCTTCGTCGT CGACTTCTTC TTCCTCCGCC GTAGCTAGCC ACCAGCAATT 
TCAAATGCTA CCGGGTACTA GTTCTACTAC TCAATTAAAG TTTGAGAAGT 
AAGTAATTAT ATAATTAAGA GAAATGGAGT ATTTTATGTA ATCTGAAATG 
TGATTTGGTC TCTTTCTTAT ATGTTGATTT TAATTTTAGG TTATGTGGTT 
CAGTTTTAGT TACTAGTGTA TGCTGGGGGG AGGAAGGTAG GGTTTTCAAT 
TTTATTTATA TCTAATAAAA GAGAAATTCA CATGT

Gene models with high sequence identity

  1. AT2G31160.1 [+] show detail - Protein of unknown function (DUF640)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G31160.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF640)
Computational Description
LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-32-N13 introduced

  • F20922 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found