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  3. RAFL09-33-A19

RAFL09-33-A19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17699)

full reading [+] show sequence

Nucleotide sequence: RAFL09-33-A19 - full reading 
TGAGGGATTT GAGTGGTTTT CTTCTTGTCT CTTGCGACTG CAACGATGAC 
GAGTCTCTTG AAGTCATCGC CTGGACGACG CCGTGGAGGC GATGTGGAGT 
CTGGGAAGAG TGAACACGCA GACTCTGATA GCGACACTTT CTACATCCCA 
TCGAAGAATG CTTCTATTGA GCGGCTTCAA CAGTGGAGAA AAGCTGCACT 
GGTTCTCAAT GCGTCCCGGA GATTCCGGTA CACCTTGGAC TTGAAGAAGG 
AGCAAGAAAC GAGGGAAATG AGACAGAAGA TCAGAAGTCA TGCTCATGCT 
CTTTTGGCGG CGAATCGTTT TATGGATATG GGACGTGAGT CAGGAGTTGA 
AAAAACAACT GGGCCTGCAA CTCCGGCTGG TGATTTTGGA ATTACTCCTG 
AACAGCTTGT GATAATGTCA AAGGATCACA ACAGTGGTGC CCTGGAGCAA 
TATGGAGGGA CTCAAGGATT GGCCAATTTG CTCAAGACAA ATCCAGAGAA 
AGGTATCAGT GGCGATGATG ATGACTTGCT AAAGCGCAAG ACCATTTATG 
GATCAAACAC ATATCCTCGC AAGAAAGGGA AAGGGTTTCT GAGGTTTCTT 
TGGGATGCTT GCCATGATCT CACCTTGATC ATTTTAATGG TTGCTGCTGT 
AGCGTCTTTA GCACTTGGGA TAAAAACAGA GGGTATCAAA GAAGGATGGT 
ATGATGGAGG AAGCATTGCA TTTGCTGTGA TTCTTGTGAT TGTTGTGACG 
GCTGTCAGTG ACTACAAACA GTCGCTCCAG TTTCAAAACT TGAATGATGA 
AAAGAGAAAC ATACATCTGG AGGTGTTAAG AGGTGGAAGA CGAGTGGAGA 
TTTCGATCTA TGACATAGTG GTGGGTGATG TCATTCCTCT CAACATTGGC 
AATCAGGTTC CTGCTGATGG AGTACTGATA TCTGGCCACT CTCTCGCCCT 
TGATGAATCT AGCATGACTG GAGAGAGCAA AATTGTTAAC AAAGACGCTA 
ACAAGGACCC ATTCTTAATG TCTGGCTGTA AAGTGGCAGA TGGAAATGGT 
TCTATGCTGG TTACTGGTGT TGGAGTCAAC ACTGAATGGG GATTGCTGAT 
GGCCAGTATT TCTGAAGACA ATGGTGAAGA AACTCCCTTG CAGGTGCGCT 
TAAATGGGGT AGCTACTTTT ATTGGTTCAA TTGGCTTAGC GGTGGCTGCT 
GCTGTGCTAG TGATTCTTCT GACTCGATAT TTCACTGGTC ACACTAAAGA 
CAATAATGGA GGTCCTCAAT TCGTTAAAGG CAAGACAAAA GTCGGTCATG 
TTATTGATGA TGTGGTCAAA GTCCTTACCG TAGCGGTTAC AATTGTCGTA 
GTGGCAGTGC CTGAGGGTCT TCCTTTGGCT GTTACTTTAA CCCTTGCCTA 
TTCAATGAGG AAAATGATGG CAGATAAGGC TTTGGTGCGG AGGCTATCTG 
CTTGCGAGAC AATGGGCTCT GCCACCACTA TTTGCAGCGA TAAAACTGGA 
ACACTAACTC TGAATCAGAT GACTGTGGTT GAGTCTTATG CTGGGGGCAA 
GAAAACAGAT ACTGAACAAT TGCCAGCAAC TATCACTTCG CTAGTAGTTG 
AAGGAATATC TCAAAACACA ACTGGTAGTA TTTTTGTCCC AGAGGGTGGA 
GGTGATTTAG AGTACTCTGG TTCACCAACA GAAAAGGCCA TTCTTGGCTG 
GGGAGTTAAG CTGGGAATGA ATTTCGAGAC AGCCCGATCG CAGTCTTCTA 
TTCTTCATGC TTTTCCATTT AACTCAGAGA AGAAACGTGG TGGTGTTGCT 
GTAAAAACGG CTGATGGTGA AGTTCATGTT CACTGGAAAG GAGCTTCTGA 
AATTGTCCTG GCATCATGCC GAAGCTACAT CGATGAGGAT GGTAATGTGG 
CACCAATGAC TGACGACAAG GCATCGTTTT TCAAGAATGG CATTAATGAT 
ATGGCTGGAA GAACCTTACG ATGTGTTGCA CTCGCCTTTA GAACCTATGA 
GGCTGAAAAG GTCCCAACAG GCGAAGAGCT CTCAAAGTGG GTACTCCCAG 
AGGATGATCT TATATTATTA GCTATAGTGG GCATAAAGGA TCCATGTAGA 
CCAGGAGTCA AAGATTCAGT TGTGTTGTGT CAAAATGCTG GTGTCAAGGT 
CCGTATGGTT ACTGGTGACA ACGTCCAAAC TGCCAGGGCT ATTGCCTTGG 
AATGTGGAAT ACTAAGTTCA GATGCAGATC TCTCCGAGCC TACTCTCATT 
GAAGGAAAAT CATTCCGTGA GATGACTGAT GCAGAAAGGG ACAAGATTAG 
TGACAAAATA TCGGTTATGG GCCGATCATC TCCCAATGAC AAACTTCTGC 
TGGTACAATC TCTGAGACGA CAAGGGCATG TTGTTGCTGT CACCGGGGAT 
GGGACAAATG ATGCTCCTGC ATTGCACGAG GCAGATATTG GTCTTGCTAT 
GGGAATAGCA GGAACAGAAG TGGCTAAGGA GAGTTCGGAC ATCATCATCT 
TGGATGACAA CTTTGCTTCA GTTGTCAAGG TTGTTCGATG GGGGCGATCA 
GTGTATGCCA ACATTCAGAA GTTCATCCAA TTTCAGCTCA CAGTCAATGT 
CGCCGCTCTC GTAATTAATG TTGTAGCTGC TATTTCGAGT GGTGACGTTC 
CACTTACCGC TGTGCAGCTT CTCTGGGTTA ATCTGATAAT GGACACTCTT 
GGAGCATTGG CTTTGGCTAC TGAACCACCC ACTGATCACC TCATGGGGAG 
GCCTCCAGTT GGCAGAAAAG AACCTCTTAT TACCAACATC ATGTGGAGAA 
ACTTGCTGAT CCAGGCTATT TATCAAGTGA GTGTATTGTT AACACTCAAT 
TTCCGAGGCA TAAGCATACT TGGCCTGGAG CATGAAGTGC ATGAACACGC 
CACTAGAGTG AAGAACACAA TAATCTTCAA CGCCTTTGTT CTCTGCCAAG 
CTTTCAATGA GTTCAATGCT CGTAAACCAG ATGAGAAGAA CATCTTCAAA 
GGTGTGATCA AGAATCGTCT CTTTATGGGA ATAATAGTCA TAACTCTTGT 
GCTCCAGGTT ATCATTGTTG AGTTCCTTGG TAAATTCGCT TCCACGACGA 
AACTAAACTG GAAGCAATGG CTTATCTGTG TTGGCATCGG TGTTATCAGT 
TGGCCTCTTG CTTTGGTCGG GAAATTCATT CCGGTGCCTG CAGCTCCTAT 
AAGCAACAAA TTGAAAGTAC TAAAATTCTG GGGCAAGAAG AAAAATTCTT 
CTGGAGAAGG TTCACTCTGA TTTGGAGGCC AGTTTATTAT CTCTCAGACA 
CTGATGAGAT TGTTTGATAC TCTTTTAGGA CTAACAGAAA AAAAAACGTT 
TGGTTTGGTA TGATGGATTT ATTGATATTT TTCGGAAACC CAACCCCCCA 
AGTACAGTTT TTCGGGGTTT GTTGGTCGAG CAACTTTGGA TTACTGGTTT 
TCTTTTTGGT CTTTTTTTTT GTAATATGAT CGACTACCTT TCGAATCATT 
ACTGGTAAAG ATTTTAACCA AAAAA

Gene models with high sequence identity

  1. AT5G57110.2 [+] show detail - autoinhibited Ca2+ -ATPase, isoform 8
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr ATPase, P-type, calcium-transporting, PMCA-type 0
HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.6e-16
HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2e-23
HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 7.2e-34
HMMPfam ATPase, P-type, ATPase-associated domain 2.3e-62
HMMPfam ATPase, P-type cation-transporter, C-terminal 2.1e-47
HMMPfam Haloacid dehalogenase-like hydrolase 4.4e-22
HMMPfam CaATP_NAI 4.6e-19
HMMPfam ATPase, P-type cation-transporter, N-terminal 0.00000000000072
HMMSmart ATPase, P-type cation-transporter, N-terminal 0.000007
PatternScan ATPase, P-type phosphorylation site 0
Gene3D no description 7.7e-24
Gene3D no description 1.8e-39
Gene3D no description 2.4e-87
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000021
FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000021
FPrintScan ATPase, P-type, H+ transporting proton pump 0.000000000021
superfamily Calcium ATPase, transmembrane domain M 3.9e-121
superfamily HAD-like 8.3e-49
superfamily Calcium ATPase, transduction domain A 9.1e-26
HMMPanther CATION-TRANSPORTING ATPASE PLANT 0
HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0

See the detailed result >

AT5G57110.2

Model type
Protein coding
Short Description
autoinhibited Ca2+ -ATPase, isoform 8
Curator Summary
Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.
Computational Description
"autoinhibited Ca2+ -ATPase, isoform 8" (ACA8); FUNCTIONS IN: protein self-association, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase 10 (TAIR:AT4G29900.1); Has 45517 Blast hits to 34552 proteins in 3221 species: Archae - 872; Bacteria - 31142; Metazoa - 4022; Fungi - 2709; Plants - 2112; Viruses - 3; Other Eukaryotes - 4657 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-33-A19 introduced

  • F04119 - Specific phenotypes were NOT observed.
  • F07221 - Specific phenotypes were NOT observed.
  • F17239 - Specific phenotypes were NOT observed.
  • F19751 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found