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  3. RAFL09-33-D24

RAFL09-33-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05990)

full reading [+] show sequence

Nucleotide sequence: RAFL09-33-D24 - full reading 
GTTATTATTC CTCCATTTAT TCATCTCAAA ACCCATATCT CTCTGTCTTG 
ATCTCTCTCT CACTTTCTAA TAAGATCAAA GAAGATGTCG AAAGCTACCA 
TAGAACTCGA TTTCCTCGGA CTTGAGAAGA AACAAACCAA CAACGCTCCT 
AAGCCTAAGT TCCAGAAATT TCTCGATCGC CGTCGTAGTT TCCGAGATAT 
TCAAGGTGCG ATTTCGAAAA TCGATCCGGA GATTATCAAA TCGCTGTTAG 
CTTCCACTGG AAACAATTCC GATTCATCGG CTAAATCTCG TTCGGTTCCG 
TCTACTCCGA GGGAAGATCA GCCTCAGATC CCGATTTCTC CGGTCCACGC 
GTCTCTCGCC AGGTCTAGTA CCGAACTCGT TTCGGGAACT GTTCCTATGA 
CGATTTTCTA CAATGGAAGT GTTTCAGTTT TCCAAGTGTC TCGTAACAAA 
GCTGGTGAAA TTATGAAGGT CGCTAATGAA GCAGCATCTA AGAAAGACGA 
GTCGTCGATG GAGACAGATC TTTCGGTAAT TCTTCCGACC ACTCTAAGAC 
CAAAGCTCTT TGGCCAGAAT CTAGAAGGAG ATCTTCCCAT CGCAAGGAGA 
AAGTCACTGC AACGTTTTCT CGAGAAGCGC AAGGAGAGAT TAGTATCAAC 
ATCTCCTTAC TATCCGACAT CGGCCTAAAC GATCTCTTTT TAGATTGGGA 
CATGGACCAA ATTTGTCTTT TTCAATCGGA AGACATCCAT GTTCGTTTTT 
GGATTTGGCT TATTTCCAAT CTTCTTTTGA AGCCTTCTTC GTCGTTGCTA 
AATCGTATAC TATTCACGAC AAACGTTTTT AGGAGATTAC GTTACCTACT 
AAGATTATAT ATATTGGTTT GTTTTTAAAA ATGTCTATTA TCTTTATTGT 
CATTGATAGC TTGATTTAAG AAGCTCTCTC TTATCCCGTG ACCTTCTACT 
TTTGTTTTAT TTTTTAGTAT ATGGTAAAGA AAATTATAAC

Gene models with high sequence identity

  1. AT5G13220.1 [+] show detail - jasmonate-zim-domain protein 10
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam CCT domain-like 8.8e-15
HMMPfam Tify 3.9e-12
ProfileScan Tify 12.138

See the detailed result >

AT5G13220.1

Model type
Protein coding
Short Description
jasmonate-zim-domain protein 10
Curator Summary
Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.
Computational Description
jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-33-D24 introduced

  • F01707 - Specific phenotypes were NOT observed.
  • F01722 - Specific phenotypes were NOT observed.
  • F02508 - Specific phenotypes were NOT observed.
  • F07329 - Specific phenotypes were NOT observed.
  • F14306 - Specific phenotypes were NOT observed.
  • F17716 - Specific phenotypes were NOT observed.
  • F23224 - Specific phenotypes were NOT observed.
  • F24619 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found