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  3. RAFL09-33-L03

RAFL09-33-L03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06010)

full reading [+] show sequence

Nucleotide sequence: RAFL09-33-L03 - full reading 
GAGAAAAAAC AGCAAAGAAA ATCAGAGAGA TCAAAAAAAA GAAAAAAAAG 
AACAGAGATT CTTTTGAACT AACGAAGACA TATCGTTTCT CTAAAGTAGA 
ATCTTTGGTA TTCGGAAAAA TGTCGTTTCT GAGTATTGTT CGTGATGTTA 
GAGATACTGT AGGAAGCTTT TCGAGACGTA GTTTCGACGT GAGAGTATCT 
AATGGGACGA CTCATCAGAG GAGTAAATCT CACGGTGTTG AGGCACATAT 
TGAAGATCTT ATTGTAATCA AGAACACTCG TTGGGCTAAT TTACCGGCTG 
CGCTATTACG AGATGTGATG AAAAAGTTGG ATGAAAGCGA GAGTACTTGG 
CCTGCACGTA AACAAGTCGT TGCTTGTGCT GGTGTCTGCA AGACATGGAG 
ACTAATGTGC AAAGATATTG TGAAAAGTCC TGAGTTCTCA GGCAAACTCA 
CATTTCCAGT TTCGTTGAAA CAGCCCGGGC CTAGGGATGG AATCATACAA 
TGTTATATCA AAAGAGACAA GTCTAACATG ACTTACCACC TTTACCTTTC 
TCTTAGTCCT GCCATACTTG TTGAAAGTGG GAAGTTTCTT CTCTCGGCAA 
AGCGCTCACG GAGAGCTACA TACACAGAGT ATGTAATATC AATGGATGCA 
GACAACATTT CAAGATCAAG CAGCACTTAC ATTGGCAAAC TGAAGTCTAA 
CTTTCTAGGG ACAAAATTTA TAGTATATGA TACGGCTCCT GCGTACAACA 
GTAGCCAGAT ATTGTCCCCA CCAAACCGGA GTCGTAGTTT CAACTCCAAG 
AAAGTGTCTC CCAAAGTCCC TTCTGGAAGT TACAACATTG CTCAAGTTAC 
ATACGAGCTG AACTTGCTTG GAACCCGTGG ACCTCGTAGA ATGAACTGCA 
TTATGCACTC TATCCCCTCC TTAGCTCTAG AACCCGGAGG TACTGTCCCT 
AGCCAACCTG AGTTTCTACA ACGTTCCCTT GATGAATCTT TCCGCAGCAT 
CGGTTCCTCA AAGATAGTCA ACCACTCGGG AGATTTCACC CGACCGAAAG 
AGGAAGAAGG AAAGGTGCGA CCTTTGGTAC TGAAAACTAA ACCGCCAAGG 
TGGCTCCAAC CGTTGCGATG TTGGTGCCTT AACTTCAAAG GGAGAGTGAC 
TGTAGCTTCT GTCAAGAACT TCCAGTTGAT GTCCGCTGCA ACGGTTCAGC 
CCGGTAGTGG TAGTGATGGT GGAGCATTGG CTACGAGGCC ATCGTTATCA 
CCACAGCAGC CAGAGCAATC AAACCATGAT AAGATAATAC TACACTTTGG 
GAAAGTGGGT AAGGATATGT TCACTATGGA CTATCGTTAT CCTCTCTCTG 
CCTTTCAAGC GTTTGCCATT TCCCTGAGCA CCTTTGATAC TAAATTGGCA 
TGTGAATAAA AGTAGAAAGA TCATAAGAGG GACTTAAAAC TAATAGGAAC 
CGTTTACGAT ATGCGAGGGT TTGTTTGTTT TTGTTTATCT GTCTGATCTG 
GTGTGTTAGT GAATGTGAAC TTTTGTGGTT GTTTATCTTC GAAAAGAAAA 
AATAAGTGTT GGTGACC

Gene models with high sequence identity

  1. AT1G43640.1 [+] show detail - tubby like protein 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Tubby, C-terminal, conserved site 0
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
FPrintScan Tubby, C-terminal 2.8e-73
superfamily Tubby, C-terminal 9.1e-99
Gene3D Tubby, C-terminal 4.9e-95
HMMPfam Tubby, C-terminal 2.8e-105
HMMPfam F-box domain, cyclin-like 5.9e-08
HMMPanther TUBBY-LIKE PROTEIN 2 3.3e-182
HMMPanther TUBBY-RELATED 3.3e-182

See the detailed result >

AT1G43640.1

Model type
Protein coding
Short Description
tubby like protein 5
Curator Summary
Member of TLP family
Computational Description
tubby like protein 5 (TLP5); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 930 Blast hits to 929 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 19; Plants - 462; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-33-L03 introduced

  • F09009 - Specific phenotypes were NOT observed.
  • F11051 - Specific phenotypes were NOT observed.
  • F12109 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / stem::abnormal
  • F20836 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found