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  3. RAFL09-33-N04

RAFL09-33-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06022)

full reading [+] show sequence

Nucleotide sequence: RAFL09-33-N04 - full reading 
AAGAGGAGCA ACAATGGAGA TCACCACTAT CATATTCCTC ATCATATCCT 
CTCTCACCTT CTCCATCTTC CTTAAACTCA TCTTCTTCTT CTCAACTCAC 
AAACTCCCAC CGGGACCACC TCGTTTTCCG GTCATCGGAA ACATCATCTG 
GCTTAAGAAA AACAACTTCT CCGATTTCCA AGGCGTTCTC CGTGACTTAG 
CCTCCCGTCA CGGACCAATC ATAACACTCC ACGTAGGCTC CAAACCTTCC 
ATCTGGGTCA CAGACAGATC ACTCGCTCAC CAAGCCCTTG TCCAAAACGG 
TGCCGTTTTC TCCGACCGTT CTCTCGCTCT CCCTACCACC AAAGTCATCA 
CCAGCAACCA ACACGACATC CACTCCTCCG TCTATGGCTC TCTCTGGAGA 
ACCCTCCGCC GCAACCTCAC CTCCGAAATC CTCCAGCCCT CGCGCGTGAA 
AGCACACGCG CCGTCGAGGA AATGGTCTCT CGAGATTCTC GTGGATCTGT 
TCGAGACAGA GCAGAGAGAG AAAGGACATA TCTCCGACGC TTTAGATCAT 
TTACGTCACG CTATGTTTTA TTTGTTGGCT CTGATGTGTT TCGGAGAGAA 
ACTGAGAAAA GAAGAGATCA GAGAGATCGA AGAAGCTCAG TACCAAATGC 
TCATAAGCTA CACCAAGTTC AGCGTCCTCA ACATCTTCCC AAGCGTAACC 
AAGTTCTTGC TCCGGCGAAA ATGGAAAGAG TTTTTAGAAC TAAGGAAATC 
TCAAGAGAGC GTTATACTTC GATACGTGAA CGCAAGAAGC AAAGAAACCA 
CCGGAGATGT TCTCTGTTAC GTCGATACGC TGCTGAATCT TGAGATCCCG 
ACGGAGGAGA AAGAAGGAGG GAAGAAGAGG AAACTGAGTG ACTCGGAGAT 
CGTGAGTCTG TGTTCGGAGT TTCTTAACGC AGCTACGGAT CCAACGGCGA 
CGTCGATGCA GTGGATCATG GCGATCATGG TGAAGTATCC AGAGATACAG 
AGGAAAGTAT ACGAGGAAAT GAAGACTGTG TTCGCCGGAG AAGAAGAAGA 
AAGAGAAGAG ATCAGAGAAG AGGATTTGGG GAAGTTGAGT TACCTCAAAG 
CTGTGATCTT GGAGTGTCTA AGAAGACACC CTCCTGGTCA TTACTTGTCT 
TACCATAAGG TCACACGCGA CACCGTTTTG GGTGGATTTC TCATTCCGCG 
CCAAGGTACT ATAAACTTTA TGGTAGGAGA AATGGGCCGG GACCCAAAAA 
TATGGGAAGA TCCTCTAACG TTCAAGCCAG AAAGATTTCT AGAGAACGGA 
GAAGCATGTG ATTTTGATAT GACGGGAACT CGCGAGATTA AAATGATGCC 
GTTTGGAGCG GGACGACGGA TGTGTCCCGG CTACGCGCTT TCGTTGCTTC 
ACCTGGAATA TTATGTGGCC AATTTGGTTT GGAAATTCGA GTGGAAATGT 
GTGGAAGGTG AAGAAGTTGA TCTATCCGAG AAGCAACAGT TCATCACAAT 
GGTCATGAAA AACCCTTTCA AAGCAAATAT TTATCCAAGG AGAAAGTGAT 
ATTTGCTTTT GTCATATTAT CAAAAAGGCC CATTGGGCTT ATTTGTCGTA 
TGTATATTAA AAACTTTGTC TCATATGTAT TAAAACAATT TGGGCCTTTA 
ATGGGTTTCA ATATAAAGAT GTCAACACTT TTAGTC

Gene models with high sequence identity

  1. AT3G03470.1 [+] show detail - cytochrome P450, family 87, subfamily A, polypeptide 9
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPanther CYTOCHROME P450 SUBFAMILY 79A 8.6e-285
HMMPanther Cytochrome P450 8.6e-285
superfamily Cytochrome P450 8.5e-110
HMMPfam Cytochrome P450 8e-89
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, E-class, group I 8.9e-36
FPrintScan Cytochrome P450, C-terminal 1.7e-08
FPrintScan Cytochrome P450, C-terminal 1.7e-08
FPrintScan Cytochrome P450, C-terminal 1.7e-08
FPrintScan Cytochrome P450, C-terminal 1.7e-08
Gene3D Cytochrome P450 9e-103
PatternScan Cytochrome P450, conserved site 0

See the detailed result >

AT3G03470.1

Model type
Protein coding
Short Description
cytochrome P450, family 87, subfamily A, polypeptide 9
Curator Summary
member of CYP89A
Computational Description
"cytochrome P450, family 87, subfamily A, polypeptide 9" (CYP89A9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 30488 Blast hits to 30273 proteins in 1588 species: Archae - 47; Bacteria - 2858; Metazoa - 11557; Fungi - 5907; Plants - 9145; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-33-N04 introduced

  • F01631 - Specific phenotypes were NOT observed.
  • F02229 - Specific phenotypes were NOT observed.
  • F04502 - Specific phenotypes were NOT observed.
  • F07933 - Specific phenotypes were NOT observed.
  • F09838 - Specific phenotypes were NOT observed.
  • F15125 - Specific phenotypes were NOT observed.
  • F25342 - Specific phenotypes were NOT observed.
  • F27120 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found