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  3. RAFL09-33-O20

RAFL09-33-O20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08225)

full reading [+] show sequence

Nucleotide sequence: RAFL09-33-O20 - full reading 
AGCTTCTAAC GTCACGGCTC AGGAGGGCTA CTTCATCGGT TCGATTGGGA 
TTGCTCCTGA CCAAGTCTTT GCCACCGGGA TGTGCGCTCC AGGTTCTGAG 
CGTGATGTTT GCTCTCTCTG TATCAGGTCC ACATCAGAGA GTTTACTACA 
AAGCTGTCTG GACCAGGCAG ATGCTTTCTT CTGGTCAGGT GAAGAAACCC 
TTTGCCTTGT TCGCTACGCT AACCGCCCCT TCTCTGGATT GCTCGTCATG 
GATCCACTAG GAGCGATATT CAACACAGGA GAACTCAATA CGAATCAGAC 
TGTGTTTGAT ATCGAGTGGA ATAATTTAAC TTCTAGTATG ATCGCCGGAA 
TAACTTCTTC TTCATCAGGG GGGAACAATT CGTCTAAGTA CTACTCAGAC 
GATATAGCTC TTGTGCCGGA TTTTAAGAAC ATATCAGCGT TGATGCAATG 
CACACCAGAC GTTTCGTCAG AGGATTGTAA CACTTGCTTA CGGCAAAACG 
TTGTCGACTA TGATAATTGT TGCCGTGGGC ACCAAGGCGG CGTTATGTCA 
AGGCCAAACT GCTTTTTCCG ATGGGAAGTG TATCCCTTCT CTGGTGCTAT 
TGATCAGATT AATTTACCAA AGTCACCGCC GCCTTCAGTT ACATCCCCGT 
CTCCTATAGC CAACATAACC AAGAATGATA GTAGAATATC AGGAGGAAAA 
ATCGCAGCAA TAGTTGTTGT TACTGTTGTT ACAATAATAT TGGTTGTTTT 
AGGCTTTGTT ATTTCCAATA GAAGAAAGCA AAAGCAAGAA ATGGATCTTC 
CAACGGAATC TGTTCAATTT GATTTAAAGA CAATTGAATC GGCGACAAGC 
AACTTTTCCG AACGTAACAA GCTTGGTAAA GGTGGATTCG GTGAAGTTTA 
CAAGGGTATG CTCATGAATG GCACTGAAAT TGCGGTGAAG AGATTGTCGA 
AAACATCAGG ACAAGGTGAA GTAGAGTTCA AGAACGAGGT TGTTGTTGTT 
GCAAAGCTTC AACACATAAA TCTTGTTAGA CTTCTCGGGT TTTCGCTACA 
AGGAGAAGAG AAGTTACTCG TCTATGAGTT TGTTTCAAAC AAAAGCCTCG 
ATTATTTCCT CTTTGATCCT ACGAAGAGAA ATCAGTTGGA CTGGACAATG 
CGACGCAATA TCATCGGTGG CATTACTCGA GGGATTTTAT ATCTTCATCA 
AGATTCGCGG CTGAAGATCA TACATCGTGA CCTCAAAGCG AGTAACATTC 
TCTTAGATGC GGATATGAAT CCAAAAATCG CTGATTTCGG AATGGCAAGG 
ATCTTTGGAG TGGACCAAAC TGTTGCCAAT ACAGGAAGAG TGGTTGGAAC 
CTTTGGTTAC ATGTCTCCTG AGTATGTGAC ACATGGCCAA TTCTCAATGA 
AATCAGACGT CTATAGTTTT GGAGTATTGA TTCTTGAGAT CATTAGTGGC 
AAAAAGAATA GCAGCTTCTA CCAAATGGAT GGCTTAGTTA ACAATTTAGT 
CACATATGTC TGGAAACTTT GGGAGAACAA ATCATTGCAT GAGCTCTTAG 
ATCCCTTTAT CAACCAAGAT TTCACAAGCG AGGAAGTCAT TAGATACATT 
CATATTGGAC TGTTATGTGT TCAAGAAAAT CCTGCAGATC GACCAACAAT 
GTCTACGATT CACCAAATGC TCACAAACAG CTCAATCACT CTGCCTGTGC 
CTCTGCCTCC TGGATTTTTC TTTAGGAACG GACCAGGATC GAACCCGGGT 
CAGTCGAACA GCAAGTCTTT TGCTTGTTCT GTAGATGAAG CAACAATCAC 
GGACGTTAAT CCTCGTTGAA AATTCAGCAT TTGGTTTTTT CTTGTTTCCA 
CAAACGTCTA TCATTTATTT ATTGTCCGTT TATGAAAAAG TTTACAAAGG 
GTCATTTTTT CAGGTTGAAG ATTCG

Gene models with high sequence identity

  1. AT4G23260.1 [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 18
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 1.7e-83
HMMPfam Serine-threonine/tyrosine-protein kinase 3.6e-47
HMMPfam Protein of unknown function DUF26 7.3e-09
HMMPfam Protein of unknown function DUF26 9.4e-16
HMMSmart Serine/threonine-protein kinase domain 1.5e-33
HMMSmart Tyrosine-protein kinase, catalytic domain 7.2e-34
ProfileScan Protein kinase, catalytic domain 38.633
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
Gene3D no description 4.9e-23
Gene3D no description 2.1e-52
HMMPanther SERINE/THREONINE RECEPTOR-LIKE PROTEIN KINASE 1.9e-281
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.9e-281

See the detailed result >

AT4G23260.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 18
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (CRK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: kinases;protein kinases (TAIR:AT4G23250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-33-O20 introduced

  • F08906 - Specific phenotypes were NOT observed.
  • F23327 - Specific phenotypes were NOT observed.
  • F24508 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found